The 2.0 version of rSNPBase

Variant report

Variant rs12188194
Chromosome Location chr5:108389595-108389596
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:52 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:108350800-108390400 Weak transcription HSMMtube muscle
2 chr5:108356000-108399000 Weak transcription HSMM muscle
3 chr5:108360400-108389600 Weak transcription Brain Angular Gyrus brain
4 chr5:108360400-108389800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
5 chr5:108360400-108389800 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr5:108360400-108400400 Weak transcription NHEK skin
7 chr5:108360400-108404800 Weak transcription Colon Smooth Muscle Colon
8 chr5:108360400-108425200 Weak transcription Aorta Aorta
9 chr5:108372600-108389800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
10 chr5:108374800-108390000 Weak transcription Muscle Satellite Cultured Cells --
11 chr5:108376000-108390000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
12 chr5:108376400-108392600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
13 chr5:108377000-108399000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
14 chr5:108380000-108391200 Weak transcription Primary hematopoietic stem cells blood
15 chr5:108381400-108389800 Weak transcription Brain Cingulate Gyrus brain
16 chr5:108382000-108389800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
17 chr5:108383600-108389600 Weak transcription H9 Cell Line embryonic stem cell
18 chr5:108386200-108389800 Weak transcription Osteobl bone
19 chr5:108386200-108390000 Weak transcription NHDF-Ad bronchial
20 chr5:108386200-108390400 Weak transcription Fetal Intestine Large intestine
21 chr5:108386400-108390000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
22 chr5:108387400-108389600 Weak transcription GM12878-XiMat blood
23 chr5:108387600-108389600 Weak transcription Fetal Brain Female brain
24 chr5:108387600-108395200 Weak transcription Fetal Stomach stomach
25 chr5:108387800-108394800 Weak transcription Left Ventricle heart
26 chr5:108388000-108389600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
27 chr5:108388000-108389600 Weak transcription Right Ventricle heart
28 chr5:108388000-108390400 Weak transcription Fetal Lung lung
29 chr5:108388000-108396600 Weak transcription Adipose Nuclei Adipose
30 chr5:108388000-108401200 Weak transcription Gastric stomach
31 chr5:108388200-108389600 Weak transcription Liver Liver
32 chr5:108388200-108389800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
33 chr5:108388200-108389800 Weak transcription Brain Inferior Temporal Lobe brain
34 chr5:108388200-108389800 Weak transcription Stomach Smooth Muscle stomach
35 chr5:108388200-108390200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
36 chr5:108388200-108390400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr5:108388200-108391200 Weak transcription Fetal Muscle Trunk muscle
38 chr5:108388200-108391400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
39 chr5:108388200-108391400 Weak transcription Dnd41 blood
40 chr5:108388200-108391800 Weak transcription Fetal Muscle Leg muscle
41 chr5:108388200-108393200 Weak transcription Pancreas Pancrea
42 chr5:108388200-108396000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
43 chr5:108388200-108401800 Weak transcription Ovary ovary
44 chr5:108388400-108390000 Weak transcription Fetal Adrenal Gland Adrenal Gland
45 chr5:108388400-108390400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
46 chr5:108388400-108391800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr5:108388400-108392600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr5:108388800-108396600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
49 chr5:108388800-108397600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
50 chr5:108388800-108412000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin

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Last update: Aug 31, 2015