Variant report

Variant	rs12194367
Chromosome Location	chr6:36705200-36705201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:36704975..36706910-chr6:36710272..36712382,2	MCF-7	breast:
2	chr6:36705103..36707775-chr6:36711430..36713266,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1065258	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1065259	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1065260	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1065261	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947627	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12196180	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs236473	0.87[CHB][hapmap]
rs2395662	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904294	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs743870	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7741255	1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7763347	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9470385	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv885809	chr6:36687518-36719079	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv885810	chr6:36695223-36714491	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
8	nsv885811	chr6:36695223-36719079	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
9	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
10	nsv885812	chr6:36696904-36705684	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
11	nsv819609	chr6:36700559-36708943	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	nsv520755	chr6:36702284-36713720	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv885813	chr6:36702843-36713720	Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	nsv602950	chr6:36704787-36708917	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv525168	chr6:36704787-36713720	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv885814	chr6:36704807-36722842	Enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36703400-36706800	Enhancers	Fetal Muscle Leg	muscle
2	chr6:36703400-36707000	Weak transcription	Gastric	stomach
3	chr6:36703400-36710200	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr6:36703400-36718000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr6:36703600-36709000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:36703800-36705400	Weak transcription	Spleen	Spleen
7	chr6:36703800-36706800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:36703800-36711400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:36703800-36712800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr6:36703800-36718000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:36704000-36706800	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:36704000-36707000	Weak transcription	Adipose Nuclei	Adipose
13	chr6:36704000-36707600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:36704000-36707600	Weak transcription	Osteobl	bone
15	chr6:36704000-36708000	Weak transcription	Colonic Mucosa	Colon
16	chr6:36704000-36708800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:36704000-36709200	Weak transcription	Esophagus	oesophagus
18	chr6:36704000-36709400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:36704000-36709800	Weak transcription	Fetal Stomach	stomach
20	chr6:36704000-36711600	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr6:36704000-36711800	Weak transcription	Brain Anterior Caudate	brain
22	chr6:36704000-36712600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr6:36704000-36718000	Weak transcription	Right Atrium	heart
24	chr6:36704000-36720400	Weak transcription	Right Ventricle	heart
25	chr6:36704200-36706800	Weak transcription	HUVEC	blood vessel
26	chr6:36704200-36706800	Weak transcription	NHDF-Ad	bronchial
27	chr6:36704200-36707400	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:36704200-36707600	Weak transcription	NHLF	lung
29	chr6:36704200-36709200	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr6:36704200-36709400	Weak transcription	Stomach Mucosa	stomach
31	chr6:36704200-36710200	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:36704200-36711800	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr6:36704400-36705200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:36704800-36705200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:36704800-36705600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr6:36704800-36707600	Enhancers	Primary B cells from peripheral blood	blood
37	chr6:36705000-36705200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:36705000-36705600	Enhancers	Primary B cells from cord blood	blood
39	chr6:36705000-36705800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
40	chr6:36705200-36705400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr6:36705200-36707600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links