Variant report

Variant	rs1219447
Chromosome Location	chr11:121805583-121805584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs12420643	0.83[ASN][1000 genomes]
rs12421071	0.83[ASN][1000 genomes]
rs1944939	0.83[ASN][1000 genomes]
rs57118713	0.82[ASN][1000 genomes]
rs58843185	0.82[ASN][1000 genomes]
rs60777294	0.82[ASN][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121801400-121813000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:121801600-121807000	Weak transcription	Psoas Muscle	Psoas
3	chr11:121801600-121807000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr11:121801600-121807000	Weak transcription	NH-A	brain
5	chr11:121801600-121807200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:121803000-121806400	Weak transcription	Osteobl	bone
7	chr11:121803000-121806800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:121803200-121806600	Weak transcription	NHLF	lung
9	chr11:121803600-121805800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:121803600-121806000	Weak transcription	NHDF-Ad	bronchial
11	chr11:121803600-121807200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:121803800-121807400	Weak transcription	Liver	Liver
13	chr11:121804000-121806400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:121804000-121806600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:121804000-121808800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr11:121804200-121807000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr11:121804400-121805800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:121804400-121805800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr11:121804400-121807000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:121804800-121805800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr11:121804800-121807200	Weak transcription	HepG2	liver
22	chr11:121805400-121805800	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links