Variant report

Variant	rs12195049
Chromosome Location	chr6:101989025-101989026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10485270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11156141	0.93[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12215960	0.84[JPT][hapmap]
rs2245825	0.80[JPT][hapmap]
rs2518220	0.80[JPT][hapmap]
rs2518289	0.80[JPT][hapmap]
rs2518302	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101983200-101991400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:101986000-101991400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:101986600-101993200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:101988200-101991800	Weak transcription	HMEC	breast
5	chr6:101988200-101992200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:101988200-101992600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:101988400-101992200	Weak transcription	NHEK	skin
8	chr6:101988600-101989800	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:101988600-101992200	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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