Variant report

Variant	rs12195271
Chromosome Location	chr6:127786453-127786454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:127786072..127788104-chr6:127788980..127790821,2	MCF-7	breast:
2	chr6:127785682..127786641-chr6:127860182..127860789,5	MCF-7	breast:
3	chr6:127786128..127786713-chr6:127868102..127868634,2	K562	blood:
4	chr6:127785791..127786661-chr6:127836959..127837963,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214338	Chromatin interaction

rs_ID	r²[population]
rs41285270	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:127758200-127794800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:127769200-127790800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:127769200-127795400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:127771400-127793000	Weak transcription	A549	lung
5	chr6:127771400-127795000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:127771400-127795800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:127780400-127796200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:127780400-127803800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:127780600-127793000	Weak transcription	Fetal Brain Male	brain
10	chr6:127780600-127795000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr6:127780600-127795600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:127780600-127795800	Weak transcription	Brain Angular Gyrus	brain
13	chr6:127780600-127795800	Weak transcription	Ovary	ovary
14	chr6:127780600-127796400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:127780600-127804400	Weak transcription	Right Atrium	heart
16	chr6:127780800-127787000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr6:127780800-127787800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr6:127780800-127793800	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr6:127780800-127796400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:127780800-127796400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr6:127781000-127790800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:127781000-127791400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr6:127781000-127804800	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:127781200-127791600	Weak transcription	Brain Anterior Caudate	brain
25	chr6:127781200-127795600	Weak transcription	Brain Substantia Nigra	brain
26	chr6:127781400-127789400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:127781400-127791000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:127781400-127794800	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:127781800-127788000	Strong transcription	Brain Germinal Matrix	brain
30	chr6:127782000-127790200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:127783600-127786600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr6:127783600-127786800	Enhancers	Colon Smooth Muscle	Colon
33	chr6:127783600-127787000	Enhancers	Fetal Muscle Leg	muscle
34	chr6:127783800-127805000	Strong transcription	Fetal Brain Female	brain
35	chr6:127784200-127786800	Enhancers	HSMM	muscle
36	chr6:127784200-127786800	Enhancers	Osteobl	bone
37	chr6:127784600-127786600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:127784600-127787200	Enhancers	Fetal Stomach	stomach
39	chr6:127784800-127786600	Enhancers	Stomach Smooth Muscle	stomach
40	chr6:127785000-127786800	Enhancers	NHDF-Ad	bronchial
41	chr6:127785200-127786600	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr6:127785200-127786800	Enhancers	NHLF	lung
43	chr6:127785600-127786800	Enhancers	HSMMtube	muscle
44	chr6:127785800-127786600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
45	chr6:127785800-127786800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr6:127785800-127796400	Weak transcription	Fetal Lung	lung
47	chr6:127786000-127786800	Enhancers	Rectal Smooth Muscle	rectum
48	chr6:127786000-127787000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr6:127786200-127786800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr6:127786200-127787000	Enhancers	NH-A	brain

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