Variant report

Variant	rs1219670
Chromosome Location	chr1:226320004-226320005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:226318646..226321534-chr1:226372342..226374842,4	MCF-7	breast:
2	chr1:226248687..226250856-chr1:226319556..226322520,2	MCF-7	breast:
3	chr1:226318378..226321338-chr1:226323384..226325455,2	MCF-7	breast:
4	chr1:226319376..226322100-chr1:226332829..226335844,3	MCF-7	breast:
5	chr1:226319191..226321532-chr1:226326059..226327998,3	MCF-7	breast:
6	chr1:226312380..226314991-chr1:226319758..226321534,2	K562	blood:
7	chr1:226316368..226319027-chr1:226319079..226321600,2	K562	blood:
8	chr1:226274104..226276144-chr1:226317532..226320270,3	K562	blood:
9	chr1:226296024..226297911-chr1:226318078..226320711,2	MCF-7	breast:
10	chr1:226250695..226253410-chr1:226318302..226321025,2	K562	blood:
11	chr1:226308628..226313084-chr1:226318396..226322185,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000163041	Chromatin interaction
ENSG00000234478	Chromatin interaction
ENSG00000182827	Chromatin interaction
ENSG00000270598	Chromatin interaction
ENSG00000272562	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10753414	1.00[EUR][1000 genomes]
rs10915942	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11583604	1.00[ASN][1000 genomes]
rs11583736	1.00[ASN][1000 genomes]
rs11583805	1.00[ASN][1000 genomes]
rs11585469	1.00[ASN][1000 genomes]
rs11589277	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12081020	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs1219672	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1877159	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3219134	1.00[ASN][1000 genomes]
rs41268727	1.00[ASN][1000 genomes]
rs4278344	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56170974	1.00[ASN][1000 genomes]
rs72757016	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832747	chr1:226194143-226373415	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv873232	chr1:226242772-226375267	Active TSS Flanking Active TSS Genic enhancers Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
3	esv1792510	chr1:226277560-226323824	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv832759	chr1:226303760-226504170	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:226310400-226333800	Weak transcription	Small Intestine	intestine
2	chr1:226310600-226322400	Weak transcription	Right Atrium	heart
3	chr1:226310800-226331200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:226312800-226321000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr1:226313000-226323200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:226313400-226322000	Weak transcription	Rectal Smooth Muscle	rectum
7	chr1:226313400-226322600	Weak transcription	Brain Angular Gyrus	brain
8	chr1:226315600-226322600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:226315800-226320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:226316000-226320200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr1:226316000-226320600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:226316000-226322000	Enhancers	Primary B cells from cord blood	blood
13	chr1:226316000-226324000	Enhancers	Primary B cells from peripheral blood	blood
14	chr1:226316600-226320400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:226316600-226322600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:226316800-226320400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:226316800-226320400	Weak transcription	Pancreas	Pancrea
18	chr1:226316800-226320400	Weak transcription	HMEC	breast
19	chr1:226316800-226320400	Weak transcription	NHEK	skin
20	chr1:226316800-226320600	Weak transcription	Fetal Intestine Large	intestine
21	chr1:226316800-226323000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr1:226317000-226320400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr1:226317000-226320400	Weak transcription	HSMM	muscle
24	chr1:226317000-226320600	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr1:226317000-226322200	Weak transcription	Fetal Heart	heart
26	chr1:226317200-226320600	Weak transcription	HSMMtube	muscle
27	chr1:226317200-226331200	Weak transcription	Placenta	Placenta
28	chr1:226318600-226331600	Weak transcription	NH-A	brain
29	chr1:226318800-226320800	Enhancers	K562	blood
30	chr1:226319400-226320600	Enhancers	Esophagus	oesophagus
31	chr1:226319400-226320800	Enhancers	Stomach Mucosa	stomach
32	chr1:226319400-226321400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr1:226319400-226321400	Enhancers	GM12878-XiMat	blood
34	chr1:226319400-226324200	Enhancers	Gastric	stomach
35	chr1:226319600-226331200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr1:226319800-226321400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr1:226319800-226321400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr1:226319800-226321600	Enhancers	HepG2	liver
39	chr1:226319800-226321800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr1:226320000-226320400	Enhancers	Rectal Mucosa Donor 31	rectum
41	chr1:226320000-226320600	Enhancers	Colonic Mucosa	Colon
42	chr1:226320000-226321400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr1:226320000-226321600	Enhancers	Placenta Amnion	Placenta Amnion
44	chr1:226320000-226322400	Enhancers	Duodenum Mucosa	Duodenum
45	chr1:226320000-226322600	Weak transcription	Right Ventricle	heart
46	chr1:226320000-226324000	Enhancers	Sigmoid Colon	Sigmoid Colon
47	chr1:226320000-226324400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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