Variant report

Variant	rs12197188
Chromosome Location	chr6:73621620-73621621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73619228..73621648-chr6:73623234..73624763,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9446765	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12197188	CD109	cis	Nerve Tibial	GTEx

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73616200-73626600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:73616400-73623800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:73620600-73621800	Enhancers	Psoas Muscle	Psoas
5	chr6:73620600-73622600	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:73620600-73624000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:73620600-73624400	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr6:73620600-73624600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr6:73620600-73624600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:73620800-73622400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr6:73621000-73622000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:73621000-73622000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr6:73621200-73621800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:73621200-73622000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:73621200-73622000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:73621200-73622000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:73621200-73622000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:73621200-73622000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr6:73621200-73622000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr6:73621200-73622400	Enhancers	NHEK	skin
21	chr6:73621200-73624400	Enhancers	HMEC	breast
22	chr6:73621400-73622000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:73621400-73622000	Enhancers	HSMM	muscle

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