Variant report

Variant	rs12198407
Chromosome Location	chr6:132489957-132489958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10457578	1.00[AMR][1000 genomes]
rs12195132	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12214915	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762616	chr6:132404708-132584324	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132459600-132494800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:132486400-132509800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:132487800-132491200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:132488800-132490000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:132488800-132490200	Enhancers	HepG2	liver
6	chr6:132488800-132490600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:132489000-132490000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:132489000-132490200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr6:132489000-132490200	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr6:132489200-132490000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:132489200-132490000	Enhancers	Brain Cingulate Gyrus	brain
12	chr6:132489200-132490400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:132489400-132490000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr6:132489400-132490000	Enhancers	Brain Substantia Nigra	brain
15	chr6:132489400-132490200	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr6:132489400-132490400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:132489400-132490400	Enhancers	Brain Germinal Matrix	brain
18	chr6:132489600-132490800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:132489600-132495400	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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