Variant report

Variant	rs12198509
Chromosome Location	chr6:33868589-33868590
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:33865205..33866951-chr6:33868393..33870206,2	MCF-7	breast:
2	chr6:33864701..33867431-chr6:33868454..33870776,4	K562	blood:
3	chr6:33863866..33866857-chr6:33868075..33870353,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ITPR3-5	chr6:33868399-33871654	NONHSAT110812

Variant related genes	Relation type
ENSG00000249346	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12665045	0.84[CHB][hapmap]
rs17535965	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33850000-33871800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:33864000-33870800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:33864800-33869600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:33865000-33871200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr6:33865200-33868800	Weak transcription	K562	blood
6	chr6:33865400-33868800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:33865400-33869400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:33865400-33870400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:33865600-33869800	Weak transcription	Primary T cells from cord blood	blood
10	chr6:33865600-33870200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:33865600-33870400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:33865600-33870400	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr6:33865600-33870600	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr6:33865600-33870600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:33865600-33871600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:33865600-33883000	Weak transcription	Esophagus	oesophagus
17	chr6:33866000-33870200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:33866000-33871800	Weak transcription	Pancreas	Pancrea
19	chr6:33866400-33871800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:33866600-33871600	Enhancers	Fetal Thymus	thymus
21	chr6:33867000-33868600	Enhancers	Spleen	Spleen
22	chr6:33867600-33869800	Enhancers	Thymus	Thymus
23	chr6:33868200-33871600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr6:33868200-33877800	Enhancers	Primary hematopoietic stem cells	blood

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