Variant report

Variant	rs12198605
Chromosome Location	chr6:36741266-36741267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36739374..36742354-chr6:36743945..36746524,2	K562	blood:
2	chr6:36741234..36745111-chr6:36747251..36750668,4	MCF-7	breast:
3	chr6:36582002..36584849-chr6:36741162..36742749,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3176327	1.00[YRI][hapmap]
rs9462246	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv524053	chr6:36695223-36747406	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36722800-36748200	Weak transcription	Fetal Kidney	kidney
2	chr6:36734400-36744800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:36737600-36742200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:36737800-36741400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:36737800-36742200	Weak transcription	Fetal Brain Female	brain
6	chr6:36737800-36744400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:36737800-36744800	Weak transcription	Brain Germinal Matrix	brain
8	chr6:36738000-36745000	Weak transcription	Brain Angular Gyrus	brain
9	chr6:36738000-36745200	Weak transcription	Fetal Lung	lung
10	chr6:36738000-36746000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:36738200-36751400	Weak transcription	Fetal Heart	heart
12	chr6:36738400-36752200	Weak transcription	Right Atrium	heart
13	chr6:36738600-36742000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr6:36738600-36742800	Weak transcription	Left Ventricle	heart
15	chr6:36738600-36743200	Strong transcription	Fetal Stomach	stomach
16	chr6:36738600-36746000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr6:36738600-36746800	Weak transcription	Right Ventricle	heart
18	chr6:36739200-36742200	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr6:36740400-36744400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:36740400-36744400	Weak transcription	Brain Anterior Caudate	brain
21	chr6:36740400-36744800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:36740400-36744800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:36740400-36745000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr6:36740400-36745600	Weak transcription	Brain Cingulate Gyrus	brain
25	chr6:36740400-36751200	Enhancers	Dnd41	blood
26	chr6:36740600-36743200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr6:36740600-36744200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:36740600-36746000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr6:36740600-36748800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr6:36740800-36742000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:36741000-36741800	Strong transcription	Fetal Muscle Leg	muscle
32	chr6:36741200-36743200	Enhancers	Fetal Brain Male	brain

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