Variant report

Variant	rs12199194
Chromosome Location	chr6:36671392-36671393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12191972	1.00[JPT][hapmap]
rs12201069	0.91[CEU][hapmap];0.86[AMR][1000 genomes]
rs6937605	1.00[JPT][hapmap]
rs7767246	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885808	chr6:36659932-36684518	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36655000-36672000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:36661400-36696400	Weak transcription	Right Atrium	heart
3	chr6:36667000-36671400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:36669800-36674000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:36669800-36675200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:36669800-36681400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:36670000-36675600	Weak transcription	Primary B cells from cord blood	blood
8	chr6:36670000-36682200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:36670800-36671800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr6:36671000-36672200	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:36671000-36676200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr6:36671200-36671400	Enhancers	Spleen	Spleen

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links