Variant report
| Variant | rs12199690 |
|---|---|
| Chromosome Location | chr6:121007744-121007745 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:4)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:4 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | TBP | chr6:121007632-121007815 | GM12878 | blood: | n/a | n/a |
| 2 | TBP | chr6:121007708-121007908 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 3 | GTF3C2 | chr6:121007708-121008053 | Hela-S3 | cervix: | n/a | n/a |
| 4 | RPC155 | chr6:121007648-121008022 | Hela-S3 | cervix: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNA5SP215 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10457399 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs10457400 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs12191448 | 0.87[EUR][1000 genomes] |
| rs12200570 | 0.86[EUR][1000 genomes] |
| rs12201897 | 0.86[EUR][1000 genomes] |
| rs12208902 | 0.86[EUR][1000 genomes] |
| rs12210419 | 0.81[EUR][1000 genomes] |
| rs12215672 | 0.86[EUR][1000 genomes] |
| rs1538459 | 0.87[EUR][1000 genomes] |
| rs17630212 | 0.86[EUR][1000 genomes] |
| rs17630342 | 0.86[EUR][1000 genomes] |
| rs17697600 | 0.86[EUR][1000 genomes] |
| rs35740831 | 0.98[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs35918375 | 0.84[EUR][1000 genomes] |
| rs36169333 | 0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs4255015 | 0.87[EUR][1000 genomes] |
| rs6930356 | 0.87[EUR][1000 genomes] |
| rs6933304 | 0.86[EUR][1000 genomes] |
| rs7771826 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2757191 | chr6:120967277-121029949 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv2759466 | chr6:120967277-121029949 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv886586 | chr6:120968061-121020821 | ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv886588 | chr6:120978943-121016929 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 5 | nsv886589 | chr6:120978943-121020821 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 6 | esv2754699 | chr6:120983610-121029949 | Weak transcription Enhancers Active TSS Flanking Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv464036 | chr6:120983748-121008679 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 8 | nsv604570 | chr6:120983748-121008679 | Enhancers Active TSS Flanking Active TSS Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
