Variant report

Variant	rs12201006
Chromosome Location	chr6:134519006-134519007
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134494401..134497908-chr6:134517206..134521243,5	K562	blood:
2	chr6:134506367..134509100-chr6:134517089..134519394,2	MCF-7	breast:
3	chr6:134494524..134497370-chr6:134518785..134521243,2	K562	blood:
4	chr6:134495934..134501020-chr6:134516975..134520712,4	MCF-7	breast:
5	chr6:134514437..134516552-chr6:134517731..134520415,2	K562	blood:

Variant related genes	Relation type
ENSG00000118515	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1743947	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1018677	chr6:134512542-134638259	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538445	chr6:134512542-134638259	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1023931	chr6:134512542-134668702	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538446	chr6:134512542-134668702	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134499800-134523200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:134506600-134522800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:134509000-134537800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:134509200-134520000	Weak transcription	Pancreas	Pancrea
5	chr6:134511600-134522800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr6:134512600-134521000	Weak transcription	Primary T cells from cord blood	blood
7	chr6:134513400-134520200	Enhancers	HepG2	liver
8	chr6:134514000-134521200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:134514800-134521000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:134514800-134521200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:134516600-134521000	Weak transcription	Hela-S3	cervix
12	chr6:134516800-134519200	Weak transcription	Liver	Liver
13	chr6:134517000-134520200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr6:134517000-134521000	Weak transcription	A549	lung
15	chr6:134517000-134524600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr6:134517000-134526200	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:134517000-134528600	Weak transcription	Brain Anterior Caudate	brain
18	chr6:134517000-134528600	Weak transcription	Brain Substantia Nigra	brain
19	chr6:134517000-134530800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:134517600-134519400	Enhancers	Ovary	ovary
21	chr6:134518000-134520600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:134518400-134520200	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:134518600-134519600	Enhancers	K562	blood
24	chr6:134518800-134519200	Weak transcription	Fetal Intestine Large	intestine

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