Variant report
| Variant | rs12201007 |
|---|---|
| Chromosome Location | chr6:49861790-49861791 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:49861580..49864160-chr6:49915765..49917342,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000214643 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs12191923 | 0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12195555 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12207683 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs1337819 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs1547776 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs17736662 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs55727321 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs62404942 | 0.94[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs62406371 | 0.94[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62406372 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs62406373 | 0.85[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs62406377 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs62406378 | 0.85[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
