Variant report
| Variant | rs12201108 |
|---|---|
| Chromosome Location | chr6:12514236-12514237 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:9)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:9 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | POLR2A | chr6:12514233-12514651 | GM12878 | blood: | n/a | n/a |
| 2 | POLR2A | chr6:12514097-12514963 | GM12892 | blood: | n/a | n/a |
| 3 | GATA2 | chr6:12514230-12514553 | K562 | blood: | n/a | n/a |
| 4 | POLR2A | chr6:12514229-12514958 | GM12891 | blood: | n/a | n/a |
| 5 | HEY1 | chr6:12514212-12514586 | K562 | blood: | n/a | n/a |
| 6 | POLR2A | chr6:12514189-12515116 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 7 | POLR2A | chr6:12514228-12515071 | GM12878 | blood: | n/a | n/a |
| 8 | POLR2A | chr6:12514164-12515010 | GM12892 | blood: | n/a | n/a |
| 9 | POLR2A | chr6:12514233-12515027 | GM12891 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RPL15P3 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv970077 | chr6:12514065-12515389 | Inactive region | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv994399 | chr6:12514215-12514238 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| 3 | esv989682 | chr6:12514221-12514238 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| 4 | esv1139827 | chr6:12514233-12514257 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
