Variant report
| Variant | rs12201351 |
|---|---|
| Chromosome Location | chr6:120331438-120331439 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr6:120331244-120331934 | HepG2 | liver: | n/a | chr6:120331429-120331440 |
| 2 | CEBPB | chr6:120331256-120331615 | ECC-1 | luminal epithelium: | n/a | chr6:120331429-120331440 |
| 3 | CEBPB | chr6:120331249-120331601 | A549 | lung: | n/a | chr6:120331429-120331440 |
| 4 | CEBPB | chr6:120331246-120331597 | Hela-S3 | cervix: | n/a | chr6:120331429-120331440 |
| 5 | CEBPB | chr6:120331298-120331555 | K562 | blood: | n/a | chr6:120331429-120331440 |
| 6 | CEBPB | chr6:120331248-120331667 | IMR90 | lung: | n/a | chr6:120331429-120331440 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MIR3144 | TF binding region |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs10457372 | 0.84[AFR][1000 genomes] |
| rs10484965 | 0.86[AFR][1000 genomes] |
| rs12202824 | 0.84[AFR][1000 genomes] |
| rs12207153 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12209282 | 0.84[AFR][1000 genomes] |
| rs1319090 | 0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs1465150 | 0.84[AFR][1000 genomes] |
| rs726179 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs9784772 | 0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886573 | chr6:120284480-120409492 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS | TF binding regionChromatin interactive regionmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2753290 | chr6:120309301-120979301 | Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | esv2752474 | chr6:120309301-120982301 | Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS | TF binding regionChromatin interactive regionlncRNAmiRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv886574 | chr6:120314863-120409492 | Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers | TF binding regionChromatin interactive regionmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 5 | nsv464031 | chr6:120314863-120424885 | Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS | TF binding regionChromatin interactive regionmiRNA | 3 gene(s) | inside rSNPs | diseases |
| 6 | nsv604561 | chr6:120314863-120424885 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS | TF binding regionChromatin interactive regionmiRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
