Variant report

Variant	rs12203186
Chromosome Location	chr6:24127799-24127800
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10946672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12208318	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210008	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12213787	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12661990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1533726	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28921124	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57625244	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9379644	1.00[AFR][1000 genomes]
rs9393527	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9393528	1.00[AFR][1000 genomes]
rs9393529	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24125800-24127800	Active TSS	Brain Angular Gyrus	brain
2	chr6:24126000-24127800	Active TSS	Brain Inferior Temporal Lobe	brain
3	chr6:24126600-24127800	Flanking Active TSS	Brain Germinal Matrix	brain
4	chr6:24126600-24127800	Flanking Active TSS	Fetal Brain Male	brain
5	chr6:24127000-24127800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:24127000-24127800	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:24127000-24127800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:24127000-24127800	Enhancers	HepG2	liver
9	chr6:24127200-24141000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr6:24127600-24127800	Flanking Active TSS	Brain Anterior Caudate	brain
11	chr6:24127600-24127800	Flanking Active TSS	Fetal Brain Female	brain
12	chr6:24127600-24133200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:24127600-24140600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr6:24127600-24146800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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