Variant report

Variant	rs12203412
Chromosome Location	chr6:36754609-36754610
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36753279..36755251-chr6:36760593..36763475,2	MCF-7	breast:
2	chr6:36746496..36750721-chr6:36752225..36755570,6	K562	blood:
3	chr6:36754481..36756552-chr6:36838736..36841694,2	K562	blood:
4	chr6:36746005..36749095-chr6:36753090..36757403,5	K562	blood:

Variant related genes	Relation type
ENSG00000198663	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs72856422	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023171	chr6:36686935-36880899	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv538202	chr6:36686935-36880899	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1033261	chr6:36687424-36837315	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv5261	chr6:36754545-36798824	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36746000-36756600	Weak transcription	Fetal Brain Male	brain
2	chr6:36746600-36756400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:36747000-36755800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:36747200-36756200	Weak transcription	Brain Anterior Caudate	brain
5	chr6:36748600-36756200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:36748600-36756400	Weak transcription	Fetal Kidney	kidney
7	chr6:36749600-36756800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:36749800-36756200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:36752600-36768400	Weak transcription	Right Atrium	heart
10	chr6:36752800-36754800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr6:36753000-36756200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:36754200-36756000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr6:36754200-36756200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:36754200-36756200	Weak transcription	Brain Angular Gyrus	brain
15	chr6:36754200-36756200	Weak transcription	Osteobl	bone
16	chr6:36754200-36756400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:36754400-36755600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:36754400-36756200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:36754400-36756400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:36754400-36756600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr6:36754400-36756600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:36754600-36756400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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