Variant report

Variant	rs12203449
Chromosome Location	chr6:134544990-134544991
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12196971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12200883	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12202125	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12206857	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes]
rs12208037	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1763496	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1763499	1.00[CHB][hapmap]
rs4895398	1.00[ASN][1000 genomes]
rs7738174	1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9402573	1.00[ASN][1000 genomes]
rs9493858	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492292	chr6:134464255-135028540	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1026369	chr6:134468470-135122264	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
3	nsv538444	chr6:134468470-135122264	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
4	nsv1018677	chr6:134512542-134638259	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538445	chr6:134512542-134638259	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1023931	chr6:134512542-134668702	Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv538446	chr6:134512542-134668702	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134532800-134551200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:134536400-134551600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:134538200-134545000	Weak transcription	Brain Anterior Caudate	brain
4	chr6:134538400-134545000	Weak transcription	Brain Hippocampus Middle	brain
5	chr6:134538600-134545800	Weak transcription	Ovary	ovary
6	chr6:134538800-134546000	Weak transcription	Pancreas	Pancrea
7	chr6:134539400-134546400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:134539400-134547000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:134539400-134549600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:134539600-134546600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:134540000-134545000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:134542400-134545800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:134544600-134545800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:134544600-134546000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:134544800-134545000	Flanking Active TSS	Liver	Liver
16	chr6:134544800-134545200	Enhancers	Adipose Nuclei	Adipose
17	chr6:134544800-134545400	Enhancers	Brain Substantia Nigra	brain
18	chr6:134544800-134545400	Enhancers	HepG2	liver
19	chr6:134544800-134545600	Enhancers	Brain Cingulate Gyrus	brain
20	chr6:134544800-134545600	Enhancers	NHDF-Ad	bronchial
21	chr6:134544800-134545800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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