Variant report

Variant	rs12203487
Chromosome Location	chr6:78158883-78158884
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10455107	1.00[AFR][1000 genomes]
rs10943440	1.00[AFR][1000 genomes]
rs10943442	1.00[AFR][1000 genomes]
rs10943444	1.00[AFR][1000 genomes]
rs10943448	1.00[AFR][1000 genomes]
rs10943450	1.00[AFR][1000 genomes]
rs10943455	1.00[AFR][1000 genomes]
rs10943458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1145834	0.96[ASN][1000 genomes]
rs11509441	1.00[AFR][1000 genomes]
rs11963068	1.00[AFR][1000 genomes]
rs11963096	1.00[AFR][1000 genomes]
rs12191358	1.00[AFR][1000 genomes]
rs12193279	1.00[AFR][1000 genomes]
rs12193587	1.00[AFR][1000 genomes]
rs12194566	1.00[AFR][1000 genomes]
rs12195192	1.00[AFR][1000 genomes]
rs12196920	1.00[AFR][1000 genomes]
rs12199380	1.00[AFR][1000 genomes]
rs12202106	1.00[AFR][1000 genomes]
rs12204537	0.98[ASN][1000 genomes]
rs12205293	1.00[AFR][1000 genomes]
rs12206101	1.00[AFR][1000 genomes]
rs12207458	1.00[AFR][1000 genomes]
rs12211642	1.00[AFR][1000 genomes]
rs12214471	1.00[AFR][1000 genomes]
rs12214530	1.00[AFR][1000 genomes]
rs12214837	1.00[AFR][1000 genomes]
rs12215818	1.00[AFR][1000 genomes]
rs12527143	0.98[ASN][1000 genomes]
rs1342630	1.00[AFR][1000 genomes]
rs16888733	1.00[AFR][1000 genomes]
rs2211488	0.98[ASN][1000 genomes]
rs4142467	1.00[AFR][1000 genomes]
rs60223508	1.00[AFR][1000 genomes]
rs62416424	1.00[AFR][1000 genomes]
rs6453981	0.89[ASN][1000 genomes]
rs72886544	0.98[ASN][1000 genomes]
rs72894702	1.00[AFR][1000 genomes]
rs72896610	1.00[AFR][1000 genomes]
rs72896611	1.00[AFR][1000 genomes]
rs72896613	1.00[AFR][1000 genomes]
rs72896661	1.00[AFR][1000 genomes]
rs72896663	1.00[AFR][1000 genomes]
rs72898730	1.00[AFR][1000 genomes]
rs72898733	1.00[AFR][1000 genomes]
rs72898736	1.00[AFR][1000 genomes]
rs72898752	1.00[AFR][1000 genomes]
rs72898768	1.00[AFR][1000 genomes]
rs72898774	1.00[AFR][1000 genomes]
rs72898792	1.00[AFR][1000 genomes]
rs72900711	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017082	chr6:77585310-78258237	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv534282	chr6:77764575-78351994	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1034979	chr6:77781244-78426249	Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538324	chr6:77781244-78426249	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1015307	chr6:77902559-78352291	Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1028259	chr6:78059491-78709871	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv538325	chr6:78059491-78709871	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	esv2758062	chr6:78100020-78283042	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv2759445	chr6:78100020-78283042	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78145800-78165800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:78155600-78159000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr6:78155600-78167200	Weak transcription	Fetal Heart	heart
4	chr6:78156800-78159800	Enhancers	NHDF-Ad	bronchial
5	chr6:78156800-78160600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:78157400-78164000	Weak transcription	HSMM	muscle
7	chr6:78157600-78160200	Weak transcription	HUVEC	blood vessel
8	chr6:78158000-78164000	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:78158200-78160400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:78158200-78164200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr6:78158200-78164200	Weak transcription	NHLF	lung
12	chr6:78158200-78164400	Weak transcription	Osteobl	bone
13	chr6:78158400-78163400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:78158600-78159400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:78158600-78161200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr6:78158600-78163800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:78158800-78164200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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