Variant report

Variant	rs12203579
Chromosome Location	chr6:12191690-12191691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1040992	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1040993	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1040994	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10484256	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10947833	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12198779	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12209830	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72828130	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72828132	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72828134	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830586	chr6:12130076-12295334	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12176200-12203400	Weak transcription	A549	lung
2	chr6:12185800-12200800	Weak transcription	Aorta	Aorta
3	chr6:12191000-12196200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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