Variant report

Variant	rs12204179
Chromosome Location	chr6:56209189-56209190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12199257	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12204391	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12209253	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17224911	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17224995	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17225023	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17225519	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17225591	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17823397	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17823553	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1883600	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3950165	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60268580	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6459154	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6903698	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908736	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6929337	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6929994	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7452915	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9464380	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9475676	0.94[ASN][1000 genomes]
rs9475677	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475678	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9475679	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9475680	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9475687	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9475688	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9986501	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491933	chr6:56177722-57171010	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56201000-56210000	Weak transcription	Osteobl	bone
2	chr6:56204200-56211600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:56207800-56210200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:56208400-56210200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:56208800-56209800	Weak transcription	NHDF-Ad	bronchial
6	chr6:56208800-56210400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:56208800-56212400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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