The 2.0 version of rSNPBase

Variant report

Variant rs1220419
Chromosome Location chr1:9866281-9866282
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:98 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:9854000-9871600 Weak transcription Brain Germinal Matrix brain
2 chr1:9857600-9867000 Weak transcription Thymus Thymus
3 chr1:9857600-9868600 Weak transcription Spleen Spleen
4 chr1:9857800-9867600 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
5 chr1:9858800-9867000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:9859000-9867800 Weak transcription Fetal Stomach stomach
7 chr1:9859000-9870800 Weak transcription Fetal Brain Female brain
8 chr1:9859000-9871400 Weak transcription Duodenum Smooth Muscle Duodenum
9 chr1:9859000-9875000 Weak transcription Monocytes-CD14+_RO01746 blood
10 chr1:9859000-9881800 Weak transcription Brain Cingulate Gyrus brain
11 chr1:9859000-9882400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr1:9859200-9867200 Weak transcription Gastric stomach
13 chr1:9859200-9867600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr1:9859200-9867600 Weak transcription Brain Angular Gyrus brain
15 chr1:9859200-9867600 Weak transcription Fetal Muscle Trunk muscle
16 chr1:9859200-9868800 Weak transcription Left Ventricle heart
17 chr1:9859200-9868800 Weak transcription Ovary ovary
18 chr1:9859200-9868800 Weak transcription Right Ventricle heart
19 chr1:9859200-9869000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:9859200-9871000 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr1:9859200-9871400 Weak transcription A549 lung
22 chr1:9859200-9871800 Weak transcription Rectal Smooth Muscle rectum
23 chr1:9859200-9874200 Weak transcription Stomach Smooth Muscle stomach
24 chr1:9859200-9874800 Weak transcription Primary monocytes fromperipheralblood blood
25 chr1:9859400-9869600 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:9859400-9881600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
27 chr1:9860400-9867600 Weak transcription Primary hematopoietic stem cells blood
28 chr1:9860400-9869000 Weak transcription GM12878-XiMat blood
29 chr1:9860400-9878600 Weak transcription Primary B cells from cord blood blood
30 chr1:9860600-9868600 Weak transcription Dnd41 blood
31 chr1:9861000-9868800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
32 chr1:9862600-9867000 Weak transcription Primary T killer naive cells fromperipheralblood blood
33 chr1:9862800-9867400 Weak transcription Primary T cells from cord blood blood
34 chr1:9863000-9866400 Weak transcription Primary T helper naive cells from peripheral blood blood
35 chr1:9863000-9867400 Weak transcription Primary T regulatory cells fromperipheralblood blood
36 chr1:9863200-9867800 Weak transcription Primary hematopoietic stem cells short term culture blood
37 chr1:9863400-9867600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
38 chr1:9863400-9868800 Weak transcription Psoas Muscle Psoas
39 chr1:9863400-9869000 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr1:9863400-9873200 Weak transcription Primary T helper 17 cells PMA-I stimulated --
41 chr1:9863600-9867600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
42 chr1:9863600-9868400 Weak transcription Colon Smooth Muscle Colon
43 chr1:9864400-9868200 Enhancers Primary T helper cells PMA-I stimulated --
44 chr1:9864400-9868200 Enhancers Fetal Thymus thymus
45 chr1:9864800-9869400 Weak transcription NHLF lung
46 chr1:9865000-9866400 Enhancers K562 blood
47 chr1:9865000-9866600 Enhancers HepG2 liver
48 chr1:9865000-9867600 Weak transcription Fetal Intestine Small intestine
49 chr1:9865000-9868600 Weak transcription Lung lung
50 chr1:9865000-9874600 Weak transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015