Variant report

Variant	rs12204800
Chromosome Location	chr6:26056708-26056709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:546)
CpG islands
(count:183)
Chromatin interactive
region (count:80)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:546 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr6:26054080-26056797	K562	blood:	n/a	n/a
2	FOXA1	chr6:26056112-26056827	HepG2	liver:	n/a	n/a
3	REST	chr6:26055099-26056805	SK-N-SH	brain:	n/a	n/a
4	REST	chr6:26056363-26056799	H1-hESC	embryonic stem cell:	n/a	n/a
5	SIN3AK20	chr6:26054919-26057002	HCT-116	colon:	n/a	n/a
6	POLR2A	chr6:26054982-26056985	ECC-1	luminal epithelium:	n/a	n/a
7	POLR2A	chr6:26054297-26057540	PANC-1	pancreas:	n/a	n/a
8	POLR2A	chr6:26054204-26056929	K562	blood:	n/a	n/a
9	NFYB	chr6:26056485-26056929	K562	blood:	n/a	chr6:26056745-26056760 chr6:26056747-26056762 chr6:26056745-26056760
10	POLR2A	chr6:26054999-26057047	PFSK-1	brain:	n/a	n/a
11	POU2F2	chr6:26054986-26056887	GM12891	blood:	n/a	chr6:26055641-26055662
12	GABPA	chr6:26056207-26056747	K562	blood:	n/a	chr6:26056734-26056745 chr6:26056731-26056745
13	MEF2A	chr6:26056031-26056738	GM12878	blood:	n/a	n/a
14	MAX	chr6:26054784-26057038	HCT-116	colon:	n/a	n/a
15	STAT5A	chr6:26054582-26056909	K562	blood:	n/a	n/a
16	SRF	chr6:26055508-26056774	K562	blood:	n/a	chr6:26056124-26056142
17	CHD2	chr6:26054296-26056856	H1-hESC	embryonic stem cell:	n/a	n/a
18	BHLHE40	chr6:26056302-26056799	K562	blood:	n/a	n/a
19	JUN	chr6:26056014-26056988	K562	blood:	n/a	chr6:26056747-26056756
20	SRF	chr6:26055937-26056734	GM12878	blood:	n/a	chr6:26056124-26056142
21	POLR2A	chr6:26054461-26056893	HepG2	liver:	n/a	n/a
22	POLR2A	chr6:26054190-26056863	HepG2	liver:	n/a	n/a
23	MAX	chr6:26054660-26056994	A549	lung:	n/a	n/a
24	CHD2	chr6:26055059-26056892	Hela-S3	cervix:	n/a	n/a
25	BCL3	chr6:26056287-26056734	K562	blood:	n/a	n/a
26	POLR2A	chr6:26054892-26056927	GM12891	blood:	n/a	n/a
27	EGR1	chr6:26056400-26056812	K562	blood:	n/a	chr6:26056735-26056744
28	MAZ	chr6:26056232-26056817	HepG2	liver:	n/a	n/a
29	POLR2A	chr6:26053795-26056895	H1-hESC	embryonic stem cell:	n/a	n/a
30	POLR2A	chr6:26054424-26056938	Hela-S3	cervix:	n/a	n/a
31	CTCF	chr6:26056660-26056810	GM12872	blood:	n/a	n/a
32	EP300	chr6:26055174-26056884	GM12878	blood:	n/a	n/a
33	YY1	chr6:26056250-26056813	SK-N-SH_RA	brain:	n/a	n/a
34	NRF1	chr6:26056238-26057111	GM12878	blood:	n/a	chr6:26056734-26056748 chr6:26056734-26056745 chr6:26056731-26056745 chr6:26056734-26056745
35	JUND	chr6:26055119-26056822	A549	lung:	n/a	chr6:26056747-26056756
36	TBP	chr6:26056466-26056909	K562	blood:	n/a	n/a
37	SIN3AK20	chr6:26055093-26056766	H1-hESC	embryonic stem cell:	n/a	n/a
38	STAT5A	chr6:26055047-26056814	GM12878	blood:	n/a	n/a
39	ZBTB33	chr6:26054758-26056860	K562	blood:	n/a	n/a
40	POLR2A	chr6:26054045-26057030	PANC-1	pancreas:	n/a	n/a
41	BCL11A	chr6:26055015-26056752	GM12878	blood:	n/a	n/a
42	ZNF143	chr6:26055081-26056816	Hela-S3	cervix:	n/a	n/a
43	SP1	chr6:26054025-26056941	K562	blood:	n/a	chr6:26055736-26055745 chr6:26055299-26055313 chr6:26056738-26056759
44	REST	chr6:26056463-26056765	GM12878	blood:	n/a	n/a
45	ZBTB33	chr6:26054614-26056917	A549	lung:	n/a	n/a
46	RCOR1	chr6:26055078-26057097	Hela-S3	cervix:	n/a	n/a
47	MXI1	chr6:26054570-26057123	GM12878	blood:	n/a	n/a
48	POLR2A	chr6:26054254-26056920	GM12892	blood:	n/a	n/a
49	USF1	chr6:26054761-26056780	K562	blood:	n/a	n/a
50	HEY1	chr6:26054442-26057279	HepG2	liver:	n/a	n/a

(count:183 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:26056674-26056724	HRCEpiC	kidney:	n/a
2	chr6:26056695-26056745	ECC-1	luminal epithelium:	n/a
3	chr6:26056706-26056756	SK-N-SH	brain:	n/a
4	chr6:26056674-26056724	AG04450	lung:	fetal
5	chr6:26056706-26056756	HEK293	kidney:	embryo
6	chr6:26056706-26056756	HUVEC	blood vessel:	n/a
7	chr6:26056706-26056756	ECC-1	luminal epithelium:	n/a
8	chr6:26056674-26056724	NT2-D1	testis:	n/a
9	chr6:26056674-26056724	Hepatocyte	liver:	n/a
10	chr6:26056695-26056745	SK-N-SH_RA	brain:	n/a
11	chr6:26056695-26056745	U87	brain:	n/a
12	chr6:26056706-26056756	HL-60	blood:	n/a
13	chr6:26056695-26056745	NHBE	bronchial:	n/a
14	chr6:26056695-26056745	HRPEpiC	eye:	n/a
15	chr6:26056674-26056724	NHBE	bronchial:	n/a
16	chr6:26056674-26056724	ovcar-3	ovarian:	n/a
17	chr6:26056674-26056724	BJ	skin:	n/a
18	chr6:26056706-26056756	AG04449	skin:	fetal
19	chr6:26056674-26056724	NB4	blood:	n/a
20	chr6:26056706-26056756	SK-N-SH_RA	brain:	n/a
21	chr6:26056674-26056724	GM06990	blood:	n/a
22	chr6:26056706-26056756	PANC-1	pancreas:	n/a
23	chr6:26056706-26056756	AG10803	skin:	n/a
24	chr6:26056674-26056724	PFSK-1	brain:	n/a
25	chr6:26056706-26056756	GM19239	blood:	n/a
26	chr6:26056674-26056724	Jurkat	blood:	n/a
27	chr6:26056695-26056745	HUVEC	blood vessel:	n/a
28	chr6:26056695-26056745	NT2-D1	testis:	n/a
29	chr6:26056695-26056745	AG10803	skin:	n/a
30	chr6:26056695-26056745	GM12878	blood:	n/a
31	chr6:26056706-26056756	PFSK-1	brain:	n/a
32	chr6:26056695-26056745	A549	lung:	n/a
33	chr6:26056674-26056724	A549	lung:	n/a
34	chr6:26056706-26056756	AG09319	gingival:	n/a
35	chr6:26056674-26056724	SAEC	small airway:	n/a
36	chr6:26056674-26056724	HCM	heart:	n/a
37	chr6:26056695-26056745	Caco-2	colon:	n/a
38	chr6:26056706-26056756	GM12878	blood:	n/a
39	chr6:26056706-26056756	AoSMC	blood vessel:	n/a
40	chr6:26056674-26056724	AG09309	skin:	n/a
41	chr6:26056695-26056745	BJ	skin:	n/a
42	chr6:26056674-26056724	HRPEpiC	eye:	n/a
43	chr6:26056674-26056724	HIPEpiC	eye:	n/a
44	chr6:26056674-26056724	SK-N-SH_RA	brain:	n/a
45	chr6:26056706-26056756	BE2_C	brain:	n/a
46	chr6:26056695-26056745	MCF10A-Er-Src	breast:	n/a
47	chr6:26056706-26056756	T-47D	breast:	n/a
48	chr6:26056706-26056756	NHBE	bronchial:	n/a
49	chr6:26056695-26056745	AG04450	lung:	fetal
50	chr6:26056706-26056756	HIPEpiC	eye:	n/a

(count:80 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr12:42538608..42539586-chr6:26056616..26057177,2	NB4	blood:
2	chr3:73160111..73160632-chr6:26056043..26056925,2	Hela-S3	cervix:
3	chr6:26055713..26057538-chr6:27839787..27841318,2	MCF-7	breast:
4	chr14:64970690..64971415-chr6:26056192..26057172,2	Hela-S3	cervix:
5	chr12:46765776..46766454-chr6:26056231..26056873,3	Hela-S3	cervix:
6	chr21:34696607..34697162-chr6:26056230..26056833,2	NB4	blood:
7	chr15:40762952..40763883-chr6:26056601..26057141,2	NB4	blood:
8	chr6:26054309..26057181-chr6:26284749..26286697,3	MCF-7	breast:
9	chr5:98264846..98265427-chr6:26056184..26056952,2	Hela-S3	cervix:
10	chr10:101380312..101380889-chr6:26056240..26057196,2	Hela-S3	cervix:
11	chr6:26056601..26057146-chr7:27779901..27780547,2	NB4	blood:
12	chr6:26052762..26068184-chr6:26093226..26113078,68	MCF-7	breast:
13	chr6:26054867..26057868-chr6:27113403..27117423,5	K562	blood:
14	chr20:44044443..44045130-chr6:26056486..26057096,2	Hela-S3	cervix:
15	chr14:67826638..67827325-chr6:26056238..26056978,2	HCT-116	colon:
16	chr6:26054932..26056773-chr6:26188728..26190968,2	MCF-7	breast:
17	chr6:26055781..26056716-chr6:28554148..28555077,2	Hela-S3	cervix:
18	chr6:26054694..26056843-chr6:26595582..26598310,3	MCF-7	breast:
19	chr6:26055873..26057142-chr6:26156132..26157208,3	Hela-S3	cervix:
20	chr16:68268704..68271099-chr6:26055048..26057879,2	MCF-7	breast:
21	chr14:62161851..62162394-chr6:26056023..26056790,2	HCT-116	colon:
22	chr4:103790073..103790585-chr6:26056049..26056795,2	NB4	blood:
23	chr21:46346404..46349719-chr6:26054432..26057685,3	MCF-7	breast:
24	chr6:26053512..26063692-chr6:26116837..26127451,29	MCF-7	breast:
25	chr6:26056468..26056978-chr6:43484362..43485206,2	Hela-S3	cervix:
26	chr1:210547151..210547696-chr6:26056200..26057150,2	Hela-S3	cervix:
27	chr1:174967994..174968767-chr6:26056381..26057142,2	Hela-S3	cervix:
28	chr6:26056308..26057054-chr6:35436068..35436860,2	Hela-S3	cervix:
29	chr16:67062528..67063091-chr6:26056072..26056992,2	Hela-S3	cervix:
30	chr6:26056629..26057130-chr9:19102816..19103401,2	Hela-S3	cervix:
31	chr6:26054191..26059059-chr6:27859322..27865313,6	K562	blood:
32	chr16:3930664..3931322-chr6:26056036..26056749,2	Hela-S3	cervix:
33	chr15:65596830..65597827-chr6:26056379..26057139,3	Hela-S3	cervix:
34	chr18:61636121..61638697-chr6:26055420..26057457,2	MCF-7	breast:
35	chr6:26054717..26057409-chr6:27111004..27117900,9	K562	blood:
36	chr6:26054953..26059351-chr6:26183267..26187731,5	MCF-7	breast:
37	chr10:75503304..75504184-chr6:26056056..26056795,2	Hela-S3	cervix:
38	chr6:26055472..26057747-chr6:27104934..27107205,2	K562	blood:
39	chr2:75937256..75938194-chr6:26056531..26057101,2	Hela-S3	cervix:
40	chr6:26056379..26057136-chr7:100026791..100027381,2	NB4	blood:
41	chr6:26056232..26057928-chr6:26382432..26384674,2	K562	blood:
42	chr1:113615667..113617631-chr6:26055280..26057308,2	MCF-7	breast:
43	chr1:113933188..113935605-chr6:26055289..26057331,2	MCF-7	breast:
44	chr4:77997074..77997728-chr6:26056445..26056982,2	HCT-116	colon:
45	chr14:100704688..100705206-chr6:26056194..26056758,2	Hela-S3	cervix:
46	chr5:38845650..38846357-chr6:26056274..26057103,2	Hela-S3	cervix:
47	chr6:26056066..26056962-chr9:98637905..98638564,2	Hela-S3	cervix:
48	chr6:26053058..26056960-chr6:27797302..27800295,3	MCF-7	breast:
49	chr3:100119965..100120769-chr6:26056301..26057168,2	Hela-S3	cervix:
50	chr17:36905519..36906045-chr6:26056010..26056877,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
HIST1H1C	TF binding region
HIST1H1C	CpG island
ENSG00000197409	Chromatin interaction
ENSG00000160255	Chromatin interaction
ENSG00000158406	Chromatin interaction
ENSG00000113739	Chromatin interaction
ENSG00000100554	Chromatin interaction
ENSG00000223247	Chromatin interaction
ENSG00000196747	Chromatin interaction
ENSG00000172239	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000188554	Chromatin interaction
ENSG00000197846	Chromatin interaction
ENSG00000147123	Chromatin interaction
ENSG00000180573	Chromatin interaction
ENSG00000187475	Chromatin interaction
ENSG00000212304	Chromatin interaction
ENSG00000146834	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000095066	Chromatin interaction
ENSG00000105254	Chromatin interaction
ENSG00000067955	Chromatin interaction
ENSG00000197697	Chromatin interaction
ENSG00000249740	Chromatin interaction
ENSG00000116161	Chromatin interaction
ENSG00000124508	Chromatin interaction
ENSG00000005339	Chromatin interaction
ENSG00000196866	Chromatin interaction
ENSG00000145354	Chromatin interaction
ENSG00000258982	Chromatin interaction
ENSG00000249599	Chromatin interaction
ENSG00000198339	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000227450	Chromatin interaction
ENSG00000142178	Chromatin interaction
ENSG00000154174	Chromatin interaction
ENSG00000134001	Chromatin interaction
ENSG00000142166	Chromatin interaction
ENSG00000233224	Chromatin interaction
ENSG00000248489	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000005436	Chromatin interaction
ENSG00000103067	Chromatin interaction
ENSG00000197061	Chromatin interaction
ENSG00000165416	Chromatin interaction
ENSG00000127481	Chromatin interaction
ENSG00000229893	Chromatin interaction
ENSG00000171453	Chromatin interaction
ENSG00000200972	Chromatin interaction
ENSG00000217862	Chromatin interaction
ENSG00000151233	Chromatin interaction
ENSG00000180596	Chromatin interaction
ENSG00000198558	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000184357	Chromatin interaction
ENSG00000130818	Chromatin interaction
ENSG00000265565	Chromatin interaction
ENSG00000124155	Chromatin interaction
ENSG00000100644	Chromatin interaction
ENSG00000185130	Chromatin interaction
ENSG00000249456	Chromatin interaction
ENSG00000182872	Chromatin interaction
ENSG00000182572	Chromatin interaction
ENSG00000166401	Chromatin interaction
ENSG00000118816	Chromatin interaction
ENSG00000203813	Chromatin interaction
ENSG00000188987	Chromatin interaction
ENSG00000145623	Chromatin interaction
ENSG00000110367	Chromatin interaction
ENSG00000222365	Chromatin interaction
ENSG00000155287	Chromatin interaction
ENSG00000105281	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000200156	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000163681	Chromatin interaction
ENSG00000105258	Chromatin interaction
ENSG00000232040	Chromatin interaction
ENSG00000197914	Chromatin interaction
ENSG00000169105	Chromatin interaction
ENSG00000081026	Chromatin interaction
ENSG00000260475	Chromatin interaction
ENSG00000198799	Chromatin interaction
ENSG00000146109	Chromatin interaction
ENSG00000143549	Chromatin interaction
ENSG00000147874	Chromatin interaction
ENSG00000198755	Chromatin interaction
ENSG00000151849	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000230424	Chromatin interaction
ENSG00000176986	Chromatin interaction
ENSG00000134294	Chromatin interaction
ENSG00000137207	Chromatin interaction
ENSG00000238198	Chromatin interaction
ENSG00000175611	Chromatin interaction
ENSG00000182150	Chromatin interaction
ENSG00000206535	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10456326	0.81[AFR][1000 genomes]
rs10484432	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10946805	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10946807	0.81[ASN][1000 genomes]
rs1150658	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1150659	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12192649	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12192932	0.81[AFR][1000 genomes]
rs12199626	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12201678	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs12205050	0.82[ASN][1000 genomes]
rs12207059	0.81[AFR][1000 genomes]
rs1543680	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17586946	0.88[AFR][1000 genomes]
rs2032444	0.81[ASN][1000 genomes]
rs2229768	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2858996	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs41266791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59306177	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs707889	0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs707890	0.89[ASN][1000 genomes]
rs707891	0.89[ASN][1000 genomes]
rs707892	0.80[ASN][1000 genomes]
rs707893	0.80[ASN][1000 genomes]
rs707894	0.80[ASN][1000 genomes]
rs72834629	0.80[AFR][1000 genomes]
rs8384	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9968910	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029920	chr6:25638507-26585842	Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
2	nsv538162	chr6:25638507-26585842	Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1215 gene(s)	inside rSNPs	diseases
3	nsv1030351	chr6:25813178-26352046	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1189 gene(s)	inside rSNPs	diseases
4	nsv1023453	chr6:25853830-26528250	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1201 gene(s)	inside rSNPs	diseases
5	nsv1025237	chr6:25874326-26280867	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
6	nsv538163	chr6:25874326-26280867	Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1166 gene(s)	inside rSNPs	diseases
7	nsv432857	chr6:25957109-26072445	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	451 gene(s)	inside rSNPs	diseases
8	nsv1015627	chr6:25973495-26100483	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
9	nsv538164	chr6:25973495-26100483	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	447 gene(s)	inside rSNPs	diseases
10	nsv1028456	chr6:25984457-26174993	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
11	nsv538165	chr6:25984457-26174993	Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	873 gene(s)	inside rSNPs	diseases
12	nsv428137	chr6:25987413-26351920	Enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1181 gene(s)	inside rSNPs	diseases
13	nsv916992	chr6:25991630-26280921	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1159 gene(s)	inside rSNPs	diseases
14	nsv1028232	chr6:26005449-26319756	Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1171 gene(s)	inside rSNPs	diseases
15	nsv870314	chr6:26008435-26280807	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1151 gene(s)	inside rSNPs	diseases
16	nsv1023457	chr6:26014014-26305407	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1170 gene(s)	inside rSNPs	diseases
17	nsv1025493	chr6:26026870-26223838	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1001 gene(s)	inside rSNPs	diseases
18	nsv1023979	chr6:26026870-26287399	Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1113 gene(s)	inside rSNPs	diseases
19	nsv1015782	chr6:26026870-26323895	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1114 gene(s)	inside rSNPs	diseases
20	nsv1018665	chr6:26026870-26352046	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1116 gene(s)	inside rSNPs	diseases
21	nsv1026692	chr6:26027408-26067081	Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	363 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs12204800	U91328.19	cis	Artery Tibial	GTEx
rs12204800	U91328.19	cis	Adipose Subcutaneous	GTEx
rs12204800	U91328.19	cis	Esophagus Mucosa	GTEx
rs12204800	U91328.19	cis	Heart Left Ventricle	GTEx
rs12204800	U91328.19	cis	Thyroid	GTEx
rs12204800	U91328.19	cis	Muscle Skeletal	GTEx
rs12204800	U91328.19	cis	Nerve Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:26053200-26057400	Active TSS	K562	blood
2	chr6:26053600-26057200	Active TSS	Thymus	Thymus
3	chr6:26054000-26057400	Active TSS	GM12878-XiMat	blood
4	chr6:26054200-26057200	Active TSS	Sigmoid Colon	Sigmoid Colon
5	chr6:26054200-26057400	Active TSS	HUES48 Cell Line	embryonic stem cell
6	chr6:26054200-26057400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:26054200-26057400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:26054200-26057400	Active TSS	Brain Anterior Caudate	brain
9	chr6:26054200-26057400	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr6:26054200-26057400	Active TSS	Stomach Smooth Muscle	stomach
11	chr6:26054200-26057400	Active TSS	A549	lung
12	chr6:26054200-26057600	Active TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:26054200-26057600	Active TSS	H1 Cell Line	embryonic stem cell
14	chr6:26054200-26057600	Active TSS	Colonic Mucosa	Colon
15	chr6:26054400-26057200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:26054400-26057200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr6:26054400-26057200	Active TSS	HSMM	muscle
18	chr6:26054400-26057400	Active TSS	H9 Cell Line	embryonic stem cell
19	chr6:26054400-26057400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:26054400-26057400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:26054400-26057400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:26054400-26057400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:26054400-26057400	Active TSS	Psoas Muscle	Psoas
24	chr6:26054400-26057400	Active TSS	Right Ventricle	heart
25	chr6:26054400-26057600	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr6:26054400-26057600	Active TSS	iPS-15b Cell Line	embryonic stem cell
27	chr6:26054400-26057600	Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr6:26054400-26057600	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr6:26054400-26057600	Active TSS	Duodenum Smooth Muscle	Duodenum
30	chr6:26054400-26057600	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr6:26054400-26057600	Active TSS	Fetal Muscle Trunk	muscle
32	chr6:26054600-26057000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
33	chr6:26054600-26057000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr6:26054600-26057200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:26054600-26057200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:26054600-26057200	Active TSS	Esophagus	oesophagus
37	chr6:26054600-26057200	Active TSS	Placenta	Placenta
38	chr6:26054600-26057200	Active TSS	Left Ventricle	heart
39	chr6:26054600-26057200	Active TSS	HSMMtube	muscle
40	chr6:26054600-26057400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:26054600-26057400	Active TSS	iPS-20b Cell Line	embryonic stem cell
42	chr6:26054600-26057400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:26054600-26057400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr6:26054600-26057400	Active TSS	Fetal Intestine Large	intestine
45	chr6:26054600-26057400	Active TSS	Ovary	ovary
46	chr6:26054600-26057400	Active TSS	Stomach Mucosa	stomach
47	chr6:26054600-26057400	Active TSS	NHLF	lung
48	chr6:26054600-26057600	Active TSS	Fetal Stomach	stomach
49	chr6:26054800-26056800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr6:26054800-26057000	Active TSS	HUES64 Cell Line	embryonic stem cell

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