Variant report

Variant	rs12205225
Chromosome Location	chr6:132215357-132215358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:132184593..132186743-chr6:132213739..132216634,2	MCF-7	breast:
2	6:132204869-132216114..6:132646256-132647474	Hela-S3	cervix:
3	6:132176847-132180372..6:132204869-132216114	K562	blood:
4	chr6:132212557..132215857-chr6:132216819..132222290,4	K562	blood:
5	6:132204869-132216114..6:132269655-132282174	K562	blood:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000079931	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12202373	1.00[EUR][1000 genomes]
rs12212882	1.00[EUR][1000 genomes]
rs35846214	1.00[EUR][1000 genomes]
rs67785609	0.92[EUR][1000 genomes]
rs6929388	1.00[EUR][1000 genomes]
rs71549998	1.00[EUR][1000 genomes]
rs71572989	1.00[EUR][1000 genomes]
rs9493117	0.91[EUR][1000 genomes]
rs9493122	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv515476	chr6:131615425-132228577	Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132185200-132217200	Weak transcription	Psoas Muscle	Psoas
2	chr6:132190600-132216200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:132202200-132215600	Weak transcription	Aorta	Aorta
4	chr6:132202200-132215600	Weak transcription	Ovary	ovary
5	chr6:132205600-132215600	Weak transcription	Small Intestine	intestine
6	chr6:132209600-132216000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:132210200-132215400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:132210200-132217600	Weak transcription	HSMM	muscle
9	chr6:132210400-132215800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:132210800-132216000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:132211400-132216600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:132211800-132217800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:132212000-132215800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:132212000-132215800	Weak transcription	Fetal Kidney	kidney
15	chr6:132212200-132216200	Weak transcription	NHLF	lung
16	chr6:132212200-132219000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:132212400-132215600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:132212800-132216000	Weak transcription	Adipose Nuclei	Adipose
19	chr6:132212800-132218400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr6:132213000-132218000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:132213000-132218000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr6:132213200-132215800	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr6:132213400-132217000	Enhancers	Fetal Intestine Large	intestine
24	chr6:132213600-132215600	Enhancers	Liver	Liver
25	chr6:132213600-132215800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr6:132213800-132215800	Enhancers	Rectal Mucosa Donor 29	rectum
27	chr6:132214000-132215800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:132214000-132216400	Weak transcription	Fetal Muscle Leg	muscle
29	chr6:132214000-132217000	Weak transcription	Fetal Stomach	stomach
30	chr6:132214400-132221600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr6:132214600-132215600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:132214600-132215600	Enhancers	HepG2	liver
33	chr6:132214600-132215800	Weak transcription	Pancreas	Pancrea
34	chr6:132214600-132216600	Weak transcription	Osteobl	bone
35	chr6:132214600-132216800	Enhancers	Fetal Intestine Small	intestine
36	chr6:132214600-132218600	Weak transcription	HUES48 Cell Line	embryonic stem cell
37	chr6:132214800-132215800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr6:132214800-132217600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr6:132215000-132217800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:132215000-132217800	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links