Variant report

Variant	rs12205552
Chromosome Location	chr6:144810546-144810547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10428720	1.00[EUR][1000 genomes]
rs10457760	0.87[AMR][1000 genomes]
rs10457762	1.00[EUR][1000 genomes]
rs12192454	1.00[EUR][1000 genomes]
rs12193726	0.86[EUR][1000 genomes]
rs12204844	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12205085	0.86[EUR][1000 genomes]
rs12206968	1.00[EUR][1000 genomes]
rs12207034	0.86[EUR][1000 genomes]
rs12211195	1.00[EUR][1000 genomes]
rs12212215	0.86[EUR][1000 genomes]
rs12215350	1.00[EUR][1000 genomes]
rs12215997	0.87[EUR][1000 genomes]
rs28362044	1.00[EUR][1000 genomes]
rs28733692	1.00[EUR][1000 genomes]
rs6923012	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7749416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9484883	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9484885	1.00[EUR][1000 genomes]
rs9496992	1.00[EUR][1000 genomes]
rs9496993	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031253	chr6:144599055-144883013	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv538461	chr6:144599055-144883013	Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1015228	chr6:144780458-144989321	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv538462	chr6:144780458-144989321	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144756000-144810600	Weak transcription	Small Intestine	intestine
2	chr6:144763000-144813800	Weak transcription	Brain Anterior Caudate	brain
3	chr6:144764400-144838800	Weak transcription	A549	lung
4	chr6:144771400-144815800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:144771800-144811800	Weak transcription	Stomach Mucosa	stomach
6	chr6:144778600-144813800	Weak transcription	Hela-S3	cervix
7	chr6:144784600-144812000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr6:144788800-144812000	Weak transcription	Esophagus	oesophagus
9	chr6:144788800-144821600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:144789400-144822800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:144789600-144812200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:144792400-144815400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr6:144792400-144823800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr6:144792400-144824400	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr6:144792400-144826000	Strong transcription	Primary B cells from peripheral blood	blood
16	chr6:144792600-144815400	Strong transcription	Primary B cells from cord blood	blood
17	chr6:144793200-144814000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr6:144795400-144811200	Weak transcription	NHEK	skin
19	chr6:144795600-144822600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:144795800-144849800	Weak transcription	HMEC	breast
21	chr6:144797400-144822000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr6:144799800-144816000	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:144800000-144829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr6:144800200-144815600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:144801200-144818200	Weak transcription	Fetal Heart	heart
26	chr6:144803200-144826800	Weak transcription	Fetal Brain Male	brain
27	chr6:144803400-144811200	Weak transcription	NHLF	lung
28	chr6:144803400-144869800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:144803600-144813600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:144803800-144821800	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr6:144804000-144815400	Strong transcription	Dnd41	blood
32	chr6:144804200-144815000	Strong transcription	HepG2	liver
33	chr6:144804200-144821400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr6:144804400-144814200	Strong transcription	Adipose Nuclei	Adipose
35	chr6:144804400-144815600	Strong transcription	Fetal Muscle Leg	muscle
36	chr6:144804600-144815800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr6:144804600-144816800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:144804600-144816800	Strong transcription	Left Ventricle	heart
39	chr6:144804800-144816800	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr6:144805000-144821200	Strong transcription	Fetal Thymus	thymus
41	chr6:144805200-144813400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr6:144805600-144817000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr6:144806000-144812400	Strong transcription	Osteobl	bone
44	chr6:144806200-144811600	Weak transcription	Brain Angular Gyrus	brain
45	chr6:144806200-144812400	Strong transcription	Fetal Intestine Small	intestine
46	chr6:144806200-144813400	Strong transcription	Liver	Liver
47	chr6:144806200-144815600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:144806400-144813600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr6:144806400-144813600	Strong transcription	Lung	lung
50	chr6:144806400-144814200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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