Variant report

Variant	rs12206228
Chromosome Location	chr6:70224292-70224293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10945155	0.81[EUR][1000 genomes]
rs10945174	0.91[ASN][1000 genomes]
rs12190241	0.81[EUR][1000 genomes]
rs9342755	0.92[ASN][1000 genomes]
rs9351758	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9354846	0.80[EUR][1000 genomes]
rs9354847	0.81[EUR][1000 genomes]
rs9360388	0.91[ASN][1000 genomes]
rs996948	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021249	chr6:70186260-70237744	Active TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	esv11472	chr6:70188989-70277993	Enhancers Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv432922	chr6:70209079-70237636	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
4	nsv432923	chr6:70209079-70238111	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases
5	nsv521077	chr6:70214844-70279345	Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv528131	chr6:70216262-70233708	Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv521380	chr6:70216262-70261307	Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv516477	chr6:70217661-70233708	Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70224200-70225800	Active TSS	HUES6 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links