The 2.0 version of rSNPBase

Variant report

Variant rs12207840
Chromosome Location chr6:25515904-25515905
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:83 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:25456400-25537000 Weak transcription Esophagus oesophagus
2 chr6:25463200-25532200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr6:25464200-25518400 Weak transcription Primary hematopoietic stem cells blood
4 chr6:25466400-25516000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
5 chr6:25471600-25597200 Weak transcription Gastric stomach
6 chr6:25473600-25516000 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr6:25480800-25523600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
8 chr6:25483000-25532200 Weak transcription Rectal Smooth Muscle rectum
9 chr6:25490400-25521800 Weak transcription GM12878-XiMat blood
10 chr6:25490400-25543000 Weak transcription Hela-S3 cervix
11 chr6:25490600-25524600 Weak transcription A549 lung
12 chr6:25490800-25516400 Weak transcription Primary T cells fromperipheralblood blood
13 chr6:25490800-25521400 Weak transcription Small Intestine intestine
14 chr6:25491600-25521000 Weak transcription HSMMtube muscle
15 chr6:25494000-25551400 Weak transcription Left Ventricle heart
16 chr6:25495000-25516400 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr6:25500400-25516000 Weak transcription H9 Cell Line embryonic stem cell
18 chr6:25500600-25516000 Weak transcription HMEC breast
19 chr6:25500600-25516400 Weak transcription iPS-20b Cell Line embryonic stem cell
20 chr6:25500600-25520800 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr6:25500600-25523800 Weak transcription Placenta Placenta
22 chr6:25500800-25516000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
23 chr6:25504000-25518000 Weak transcription iPS-15b Cell Line embryonic stem cell
24 chr6:25506600-25537400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr6:25506800-25521000 Weak transcription NHEK skin
26 chr6:25507600-25525600 Weak transcription Brain Inferior Temporal Lobe brain
27 chr6:25508800-25521200 Weak transcription Spleen Spleen
28 chr6:25509800-25548600 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr6:25510600-25517800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
30 chr6:25511600-25522800 Weak transcription Primary B cells from cord blood blood
31 chr6:25511600-25531400 Strong transcription Breast Myoepithelial Primary Cells Breast
32 chr6:25511800-25516600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr6:25512200-25516000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr6:25512200-25525600 Weak transcription NHLF lung
35 chr6:25512400-25516000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr6:25512400-25516200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
37 chr6:25512800-25521800 Weak transcription ES-WA7 Cell Line embryonic stem cell
38 chr6:25513200-25517800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
39 chr6:25513800-25516000 Weak transcription iPS-18 Cell Line embryonic stem cell
40 chr6:25513800-25516200 Strong transcription Fetal Intestine Small intestine
41 chr6:25513800-25519000 Weak transcription Primary T regulatory cells fromperipheralblood blood
42 chr6:25513800-25524400 Weak transcription H1 Cell Line embryonic stem cell
43 chr6:25513800-25530200 Weak transcription Brain Germinal Matrix brain
44 chr6:25514000-25525600 Strong transcription Primary T cells from cord blood blood
45 chr6:25514200-25542600 Weak transcription Adipose Nuclei Adipose
46 chr6:25514200-25558400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
47 chr6:25514400-25523000 Weak transcription Brain Angular Gyrus brain
48 chr6:25514400-25541600 Weak transcription Colonic Mucosa Colon
49 chr6:25514600-25523800 Weak transcription Stomach Smooth Muscle stomach
50 chr6:25514800-25537800 Weak transcription Primary B cells from peripheral blood blood

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Last update: Aug 31, 2015