Variant report

Variant	rs12208896
Chromosome Location	chr6:70588984-70588985
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10755538	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11752293	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12189777	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12191461	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12201139	0.92[EUR][1000 genomes]
rs2153606	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7750029	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7757078	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7770597	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv830682	chr6:70397851-70592883	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70578600-70591600	Weak transcription	Fetal Heart	heart
2	chr6:70587600-70589400	Enhancers	Primary B cells from peripheral blood	blood
3	chr6:70588200-70589600	Enhancers	Primary B cells from cord blood	blood
4	chr6:70588400-70589400	Enhancers	GM12878-XiMat	blood
5	chr6:70588800-70597800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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