Variant report

Variant	rs12209217
Chromosome Location	chr6:48718619-48718620
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10456134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12192645	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033151	chr6:48067287-48797029	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538217	chr6:48067287-48797029	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv885879	chr6:48634956-48730669	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48715400-48723800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:48718200-48718800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:48718200-48718800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:48718200-48718800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr6:48718200-48719400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:48718400-48718800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr6:48718400-48719000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:48718400-48719000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:48718400-48719200	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr6:48718600-48719000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:48718600-48719000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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