Variant report

Variant	rs12209235
Chromosome Location	chr6:79688366-79688367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12213652	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79648800-79714400	Weak transcription	Gastric	stomach
2	chr6:79649000-79715200	Weak transcription	Stomach Mucosa	stomach
3	chr6:79658600-79695000	Weak transcription	Pancreas	Pancrea
4	chr6:79659200-79702800	Weak transcription	Psoas Muscle	Psoas
5	chr6:79659400-79702400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:79659400-79707000	Weak transcription	Esophagus	oesophagus
7	chr6:79659600-79704000	Weak transcription	Lung	lung
8	chr6:79659600-79707000	Weak transcription	Spleen	Spleen
9	chr6:79659800-79702600	Weak transcription	Right Ventricle	heart
10	chr6:79659800-79703400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr6:79659800-79704000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr6:79659800-79707000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:79664200-79695000	Weak transcription	Fetal Stomach	stomach
14	chr6:79664200-79698000	Weak transcription	Fetal Intestine Small	intestine
15	chr6:79664200-79702400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:79669800-79707000	Weak transcription	Aorta	Aorta
17	chr6:79671600-79693200	Weak transcription	Thymus	Thymus
18	chr6:79672800-79702600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr6:79675200-79689800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:79675200-79690000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr6:79675200-79693200	Weak transcription	Colonic Mucosa	Colon
22	chr6:79675200-79702200	Weak transcription	Brain Angular Gyrus	brain
23	chr6:79675200-79704600	Weak transcription	Small Intestine	intestine
24	chr6:79675400-79688600	Weak transcription	Fetal Brain Male	brain
25	chr6:79675400-79691800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr6:79675400-79695000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:79675800-79689400	Weak transcription	Fetal Muscle Leg	muscle
28	chr6:79675800-79706800	Weak transcription	NHEK	skin
29	chr6:79676000-79688600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:79676000-79688600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:79676000-79694000	Weak transcription	HSMMtube	muscle
32	chr6:79676000-79703600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr6:79676600-79691200	Weak transcription	NHLF	lung
34	chr6:79676600-79691400	Weak transcription	Osteobl	bone
35	chr6:79678200-79688800	Weak transcription	Left Ventricle	heart
36	chr6:79678400-79691400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr6:79678800-79688800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:79679000-79692000	Weak transcription	A549	lung
39	chr6:79679200-79689400	Weak transcription	Ovary	ovary
40	chr6:79679200-79691600	Weak transcription	HUVEC	blood vessel
41	chr6:79679200-79698800	Weak transcription	Brain Substantia Nigra	brain
42	chr6:79679800-79702600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr6:79680000-79689800	Weak transcription	Brain Anterior Caudate	brain
44	chr6:79680000-79690000	Weak transcription	Fetal Brain Female	brain
45	chr6:79680000-79702200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr6:79680800-79691000	Weak transcription	Fetal Heart	heart
47	chr6:79681200-79688800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr6:79681200-79690000	Weak transcription	NHDF-Ad	bronchial
49	chr6:79681400-79691200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr6:79687000-79688400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links