The 2.0 version of rSNPBase

Variant report

Variant rs12209953
Chromosome Location chr6:143869174-143869175
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143859400-143871200 Weak transcription Pancreas Pancrea
2 chr6:143859400-143875600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr6:143859400-143875600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
4 chr6:143859400-143876000 Weak transcription Primary hematopoietic stem cells blood
5 chr6:143861800-143870600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
6 chr6:143863200-143870200 Weak transcription Small Intestine intestine
7 chr6:143863400-143870200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr6:143863800-143870200 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr6:143865000-143875600 Weak transcription Primary hematopoietic stem cells short term culture blood
10 chr6:143865400-143877800 Weak transcription Primary monocytes fromperipheralblood blood
11 chr6:143865600-143874600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr6:143865800-143876000 Weak transcription Fetal Heart heart
13 chr6:143866200-143870000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
14 chr6:143866800-143869600 Weak transcription Esophagus oesophagus
15 chr6:143866800-143904600 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr6:143867000-143870400 Weak transcription HMEC breast
17 chr6:143867200-143869200 Enhancers Fetal Intestine Small intestine
18 chr6:143867200-143869800 Weak transcription Rectal Mucosa Donor 31 rectum
19 chr6:143867200-143875800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
20 chr6:143867400-143869600 Weak transcription GM12878-XiMat blood
21 chr6:143867400-143870200 Weak transcription Stomach Mucosa stomach
22 chr6:143867400-143875000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
23 chr6:143867400-143876000 Weak transcription Monocytes-CD14+_RO01746 blood
24 chr6:143867600-143870000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr6:143867600-143870200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr6:143867600-143870200 Weak transcription NHEK skin
27 chr6:143867600-143871400 Enhancers Primary T helper naive cells from peripheral blood blood
28 chr6:143867600-143871400 Enhancers Primary T helper memory cells from peripheral blood 1 blood
29 chr6:143867600-143871400 Enhancers Primary T regulatory cells fromperipheralblood blood
30 chr6:143867600-143876000 Enhancers Primary T helper cells PMA-I stimulated --
31 chr6:143867800-143869200 Enhancers Primary Natural Killer cells fromperipheralblood blood
32 chr6:143868000-143870200 Weak transcription Duodenum Mucosa Duodenum
33 chr6:143868000-143870400 Weak transcription Primary T helper naive cells fromperipheralblood blood
34 chr6:143868200-143869600 Weak transcription Primary T cells fromperipheralblood blood
35 chr6:143868200-143869600 Weak transcription Primary T helper cells fromperipheralblood blood
36 chr6:143868200-143870000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
37 chr6:143868200-143883600 Weak transcription Gastric stomach
38 chr6:143868400-143869600 Weak transcription Primary T killer memory cells from peripheral blood blood
39 chr6:143868800-143869400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
40 chr6:143869000-143869200 Weak transcription Fetal Intestine Large intestine
41 chr6:143869000-143870200 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015