Variant report

Variant	rs12211836
Chromosome Location	chr6:165840611-165840612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs73788378	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9459417	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.84[MKK][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605245	chr6:165542686-165845903	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv1031648	chr6:165544569-165841029	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv432983	chr6:165554403-165851585	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv830863	chr6:165803464-165970091	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886929	chr6:165821402-165850480	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv886930	chr6:165823608-165850480	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv464136	chr6:165837800-165862892	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv605252	chr6:165837800-165862892	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165747600-165853000	Weak transcription	A549	lung
2	chr6:165788000-165856800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr6:165806400-165862000	Weak transcription	Right Ventricle	heart
4	chr6:165814200-165853800	Weak transcription	Fetal Lung	lung
5	chr6:165816800-165850600	Weak transcription	Aorta	Aorta
6	chr6:165818400-165848000	Weak transcription	Spleen	Spleen
7	chr6:165818800-165847200	Weak transcription	Fetal Heart	heart
8	chr6:165825600-165856200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr6:165826600-165856000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:165829400-165844400	Weak transcription	Hela-S3	cervix
11	chr6:165831000-165862800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr6:165831800-165845400	Weak transcription	Placenta	Placenta
13	chr6:165832000-165845800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr6:165832200-165856800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr6:165832200-165856800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr6:165832200-165858800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:165835200-165849200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:165836000-165848200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:165836000-165873200	Weak transcription	Fetal Brain Male	brain
20	chr6:165839600-165846800	Strong transcription	HSMM	muscle
21	chr6:165839800-165840800	ZNF genes & repeats	Fetal Brain Female	brain
22	chr6:165839800-165856000	Weak transcription	Fetal Muscle Leg	muscle
23	chr6:165840000-165840800	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:165840200-165841000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:165840400-165840800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:165840400-165840800	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:165840400-165840800	ZNF genes & repeats	Fetal Kidney	kidney
28	chr6:165840400-165841000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:165840400-165841000	ZNF genes & repeats	HSMMtube	muscle
30	chr6:165840400-165841200	Strong transcription	Left Ventricle	heart
31	chr6:165840600-165846400	Weak transcription	Ovary	ovary

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