Variant report

Variant	rs12212389
Chromosome Location	chr6:27326397-27326398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27323013..27326635-chr6:27341083..27343749,3	K562	blood:

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-POM121L2-2	chr6:27325602-27328000	NONHSAT108367
2	lnc-POM121L2-2	chr6:27325602-27328000	NONHSAT108368
3	lnc-POM121L2-2	chr6:27325604-27328000	NONHSAT108369
4	lnc-POM121L2-2	chr6:27325607-27328000	NONHSAT108370
5	lnc-POM121L2-2	chr6:27325619-27328000	NONHSAT108373
6	lnc-POM121L2-2	chr6:27325656-27328000	NONHSAT108374

No data

Variant related genes	Relation type
ENSG00000124613	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10456051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10456355	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12189640	1.00[AMR][1000 genomes]
rs12191414	0.83[EUR][1000 genomes]
rs12191649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12192560	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12193557	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12194341	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12194842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12195783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12196452	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12196970	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12199685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12199806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12202956	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12204953	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12205044	1.00[AMR][1000 genomes]
rs12209174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12209905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12211931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12212348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12212632	1.00[AMR][1000 genomes]
rs12213471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12213533	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12215289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12215353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12215386	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12215878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12374607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12374649	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28410967	0.87[EUR][1000 genomes]
rs56099947	0.84[AMR][1000 genomes]
rs60888769	0.84[AMR][1000 genomes]
rs62617138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71546544	0.84[AMR][1000 genomes]
rs72839448	1.00[AFR][1000 genomes]
rs72839451	0.87[EUR][1000 genomes]
rs72839468	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72839469	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72839470	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72839471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72839474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72839479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72841397	0.84[AMR][1000 genomes]
rs72841398	0.84[AMR][1000 genomes]
rs72841399	0.84[AMR][1000 genomes]
rs72841400	0.84[AMR][1000 genomes]
rs72843151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72843177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72843191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72845006	0.84[AMR][1000 genomes]
rs72845008	0.84[AMR][1000 genomes]
rs72845011	0.84[AMR][1000 genomes]
rs72845012	0.84[AMR][1000 genomes]
rs72845025	0.84[AMR][1000 genomes]
rs72845027	0.84[AMR][1000 genomes]
rs72845028	0.84[AMR][1000 genomes]
rs72845030	0.84[AMR][1000 genomes]
rs72845031	0.84[AMR][1000 genomes]
rs72845208	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs72845232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9348763	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9368509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9379975	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9393814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1017328	chr6:27177147-27369588	Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27316800-27335400	Weak transcription	Pancreas	Pancrea
2	chr6:27323600-27327000	Weak transcription	Brain Angular Gyrus	brain
3	chr6:27325600-27328200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr6:27325800-27336200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr6:27326000-27327000	Weak transcription	Fetal Brain Male	brain
6	chr6:27326000-27327600	ZNF genes & repeats	Psoas Muscle	Psoas
7	chr6:27326000-27328000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr6:27326000-27331200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
9	chr6:27326000-27335600	Weak transcription	Brain Germinal Matrix	brain
10	chr6:27326200-27327000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
11	chr6:27326200-27328200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr6:27326200-27328200	ZNF genes & repeats	Adipose Nuclei	Adipose
13	chr6:27326200-27331000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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