Variant report

Variant	rs12213436
Chromosome Location	chr6:166871121-166871122
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:166870182..166872414-chr6:167234943..167236564,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10946165	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10946166	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10946167	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12208871	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2235273	1.00[CHB][hapmap]
rs6456087	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886938	chr6:166859725-166904398	Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886939	chr6:166859725-166922813	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
2	chr6:166824000-166901400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:166825200-166875800	Weak transcription	Colonic Mucosa	Colon
4	chr6:166827000-166873400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:166833200-166879000	Weak transcription	NH-A	brain
6	chr6:166833400-166879000	Weak transcription	HSMM	muscle
7	chr6:166834200-166879400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:166846000-166881000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:166861400-166873800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:166862000-166871600	Weak transcription	HMEC	breast
11	chr6:166862400-166873800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:166862400-166900600	Weak transcription	Primary T cells from cord blood	blood
13	chr6:166862400-166920600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr6:166862600-166871600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:166862600-166878800	Weak transcription	Brain Substantia Nigra	brain
16	chr6:166862600-166879400	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:166862600-166883000	Weak transcription	Aorta	Aorta
18	chr6:166862600-166883000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr6:166862800-166871600	Weak transcription	Liver	Liver
20	chr6:166862800-166873800	Weak transcription	Spleen	Spleen
21	chr6:166862800-166878000	Weak transcription	HSMMtube	muscle
22	chr6:166863400-166876600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr6:166863600-166900200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr6:166863600-166902000	Weak transcription	Small Intestine	intestine
25	chr6:166864200-166872600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr6:166864600-166874000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr6:166864600-166883000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr6:166864800-166871400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr6:166864800-166871400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:166864800-166872400	Weak transcription	Brain Anterior Caudate	brain
31	chr6:166864800-166872800	Weak transcription	NHLF	lung
32	chr6:166864800-166873600	Weak transcription	Pancreas	Pancrea
33	chr6:166864800-166875600	Weak transcription	Gastric	stomach
34	chr6:166864800-166877400	Weak transcription	Brain Angular Gyrus	brain
35	chr6:166864800-166899800	Weak transcription	Esophagus	oesophagus
36	chr6:166865000-166875800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:166867400-166874400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr6:166867400-166879200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr6:166867400-166892800	Weak transcription	Fetal Brain Male	brain
40	chr6:166867600-166871400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:166867600-166871400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:166867600-166871600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
43	chr6:166867600-166873600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr6:166867600-166900000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr6:166867800-166871400	Weak transcription	Brain Hippocampus Middle	brain
46	chr6:166868600-166875800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr6:166868800-166874000	Strong transcription	Fetal Stomach	stomach
48	chr6:166869000-166871400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:166869000-166871600	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr6:166869200-166871200	Enhancers	Adipose Nuclei	Adipose

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