Variant report

Variant	rs12213474
Chromosome Location	chr6:142968249-142968250
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11155256	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs12203103	1.00[JPT][hapmap]
rs12216122	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830827	chr6:142840734-143015005	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12213474	KCTD14	trans	lymphoblastoid	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:142967200-142968800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr6:142967200-142973600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr6:142967200-142973600	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr6:142967200-142975800	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:142967400-142968400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:142967400-142968800	Weak transcription	Pancreas	Pancrea
7	chr6:142967400-142971800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr6:142967600-142971200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr6:142967800-142968400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr6:142967800-142969000	Enhancers	H9 Cell Line	embryonic stem cell
11	chr6:142967800-142969600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:142968000-142972800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:142968200-142970000	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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