Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10456174	1.00[JPT][hapmap]
rs10456681	1.00[JPT][hapmap]
rs10456682	1.00[JPT][hapmap]
rs10456683	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456684	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10484642	1.00[JPT][hapmap]
rs10498797	1.00[JPT][hapmap]
rs10948812	1.00[JPT][hapmap]
rs10948817	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189890	1.00[JPT][hapmap]
rs12192520	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193891	1.00[JPT][hapmap]
rs12205456	1.00[JPT][hapmap]
rs12209457	1.00[JPT][hapmap]
rs12209701	1.00[JPT][hapmap]
rs12215711	1.00[JPT][hapmap]
rs12661397	1.00[JPT][hapmap]
rs12663327	1.00[JPT][hapmap]
rs12664425	1.00[JPT][hapmap]
rs1508632	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1648216	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54269400-54284400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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