Variant report

Variant	rs12213909
Chromosome Location	chr6:91981157-91981158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:91980246..91981835-chr6:91983530..91986182,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10498972	0.88[EUR][1000 genomes]
rs10755495	0.84[ASN][1000 genomes]
rs12210224	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2069205	0.90[ASN][1000 genomes]
rs2655645	0.93[ASN][1000 genomes]
rs2748282	0.88[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34506966	0.82[ASN][1000 genomes]
rs4314472	0.82[ASN][1000 genomes]
rs4376328	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4376329	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4380725	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4473838	0.82[ASN][1000 genomes]
rs4510643	0.82[ASN][1000 genomes]
rs4513761	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4707667	0.84[ASN][1000 genomes]
rs4707668	0.84[ASN][1000 genomes]
rs4707670	0.84[ASN][1000 genomes]
rs62417891	0.82[EUR][1000 genomes]
rs6454848	0.82[ASN][1000 genomes]
rs6454850	0.84[ASN][1000 genomes]
rs6903471	0.80[ASN][1000 genomes]
rs6907539	0.88[EUR][1000 genomes]
rs6916809	0.81[ASN][1000 genomes]
rs6917281	0.81[ASN][1000 genomes]
rs7740461	0.82[ASN][1000 genomes]
rs7758710	0.82[ASN][1000 genomes]
rs7759032	0.82[ASN][1000 genomes]
rs9294485	0.81[ASN][1000 genomes]
rs9345114	0.88[EUR][1000 genomes]
rs9345121	0.80[ASN][1000 genomes]
rs9353810	0.88[EUR][1000 genomes]
rs9353811	0.88[EUR][1000 genomes]
rs9353815	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9359934	0.82[ASN][1000 genomes]
rs9362858	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9362864	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752130	chr6:91740447-92196479	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1031681	chr6:91784557-92075312	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538359	chr6:91784557-92075312	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1017467	chr6:91802015-92417554	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv538360	chr6:91802015-92417554	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	esv2422475	chr6:91818508-91998748	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1030361	chr6:91980874-92116809	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:91977800-91988800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:91979600-91988400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:91980400-91981800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:91981000-91981600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links