Variant report
| Variant | rs12215348 |
|---|---|
| Chromosome Location | chr6:49670352-49670353 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:49669924..49672253-chr6:49702839..49705268,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000096006 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs10456142 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10456144 | 0.80[EUR][1000 genomes] |
| rs10456626 | 1.00[EUR][1000 genomes] |
| rs10456627 | 1.00[EUR][1000 genomes] |
| rs12197533 | 1.00[EUR][1000 genomes] |
| rs12203129 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12205904 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12206157 | 0.97[EUR][1000 genomes] |
| rs12208319 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12214603 | 0.80[EUR][1000 genomes] |
| rs1946508 | 1.00[EUR][1000 genomes] |
| rs72860795 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv933942 | chr6:49480550-50004231 | Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 2 | nsv933833 | chr6:49515134-49961765 | Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 23 gene(s) | inside rSNPs | diseases |
| 3 | esv3407205 | chr6:49668218-49670966 | ZNF genes & repeats Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 4 | esv3393402 | chr6:49668493-49671041 | ZNF genes & repeats Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| 5 | esv3373166 | chr6:49668993-49670741 | Weak transcription ZNF genes & repeats | Chromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:49669000-49672600 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
