Variant report

Variant	rs12218783
Chromosome Location	chr10:44384758-44384759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11238751	0.82[ASN][1000 genomes]
rs11238762	0.89[ASN][1000 genomes]
rs12218376	0.95[ASN][1000 genomes]
rs12220508	0.95[ASN][1000 genomes]
rs12220920	0.95[ASN][1000 genomes]
rs2125978	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051921	chr10:44378011-44458880	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3495236	chr10:44382596-44385094	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44360000-44392200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44375800-44387400	Weak transcription	Left Ventricle	heart
3	chr10:44377600-44387600	Weak transcription	Right Atrium	heart
4	chr10:44378200-44387000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr10:44380400-44386800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:44382600-44389000	Enhancers	NHDF-Ad	bronchial
7	chr10:44383200-44385200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr10:44383200-44388800	Enhancers	Osteobl	bone
9	chr10:44383400-44384800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:44383400-44388600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:44383400-44388800	Enhancers	NHLF	lung
12	chr10:44383400-44389000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr10:44383800-44388600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:44383800-44388800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr10:44384000-44386000	Enhancers	HSMM	muscle
16	chr10:44384200-44384800	Enhancers	Adipose Nuclei	Adipose
17	chr10:44384400-44384800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr10:44384400-44384800	Enhancers	Hela-S3	cervix
19	chr10:44384600-44384800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:44384600-44384800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr10:44384600-44385400	Weak transcription	HSMMtube	muscle
22	chr10:44384600-44387400	Weak transcription	NH-A	brain

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