Variant report

Variant	rs12220110
Chromosome Location	chr10:98066473-98066474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:98066396-98066551	Spleen_OC	spleen:	n/a	n/a
2	EBF1	chr10:98066248-98066632	GM12878	blood:	n/a	n/a
3	TCF3	chr10:98066285-98066578	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98062204..98064987-chr10:98065467..98068204,2	K562	blood:

Variant related genes	Relation type
ENSG00000229418	TF binding region
ENSG00000107447	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs74151274	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98060000-98068000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:98061400-98067800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:98063200-98067200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:98064200-98069400	Active TSS	Thymus	Thymus
5	chr10:98064800-98067000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr10:98065200-98068800	Weak transcription	Right Atrium	heart
7	chr10:98065600-98066600	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
8	chr10:98065600-98068200	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:98065800-98066800	Enhancers	Primary hematopoietic stem cells	blood
10	chr10:98065800-98067000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:98065800-98067200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
12	chr10:98065800-98067200	Flanking Active TSS	Fetal Thymus	thymus
13	chr10:98066000-98066800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr10:98066000-98067000	Enhancers	Primary B cells from cord blood	blood
15	chr10:98066200-98066600	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr10:98066200-98066600	Enhancers	Colon Smooth Muscle	Colon
17	chr10:98066200-98066600	Enhancers	Psoas Muscle	Psoas
18	chr10:98066200-98066800	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr10:98066200-98066800	Enhancers	Brain Hippocampus Middle	brain
20	chr10:98066200-98067000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr10:98066200-98067000	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
22	chr10:98066200-98067000	Transcr. at gene 5' and 3'	Dnd41	blood
23	chr10:98066200-98067000	Enhancers	GM12878-XiMat	blood
24	chr10:98066200-98067200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr10:98066200-98068000	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr10:98066400-98066600	Enhancers	H1 Cell Line	embryonic stem cell
27	chr10:98066400-98066600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr10:98066400-98066600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:98066400-98066600	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
30	chr10:98066400-98066800	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr10:98066400-98067000	Enhancers	H9 Cell Line	embryonic stem cell
32	chr10:98066400-98067200	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr10:98066400-98067200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr10:98066400-98070000	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr10:98066400-98072400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr10:98066400-98072600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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