Variant report

Variant	rs12221890
Chromosome Location	chr11:45984209-45984210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:45981105..45984613-chr11:45985057..45988704,3	K562	blood:
2	chr11:45922704..45924810-chr11:45983177..45985526,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135365	Chromatin interaction
ENSG00000121653	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12224582	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12796678	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523952	chr11:45983385-46028281	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	esv3362230	chr11:45984149-45984393	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45952400-45996200	Weak transcription	Stomach Mucosa	stomach
2	chr11:45953000-45988600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:45957200-46004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:45957200-46004400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:45957600-45986400	Weak transcription	HMEC	breast
6	chr11:45957800-45986400	Weak transcription	NHEK	skin
7	chr11:45960400-45986600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:45967600-46004600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:45968000-45985800	Weak transcription	K562	blood
10	chr11:45970400-45985200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:45970600-45986200	Weak transcription	NHLF	lung
12	chr11:45970600-45986600	Weak transcription	Pancreas	Pancrea
13	chr11:45970600-45986800	Weak transcription	HepG2	liver
14	chr11:45970800-45989200	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:45970800-45990400	Weak transcription	NHDF-Ad	bronchial
16	chr11:45971000-45985800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:45971000-45986800	Weak transcription	Gastric	stomach
18	chr11:45971000-45990000	Weak transcription	Colonic Mucosa	Colon
19	chr11:45971000-45990600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr11:45971000-45992400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:45971200-45985200	Weak transcription	H1 Cell Line	embryonic stem cell
22	chr11:45971200-45986600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr11:45971200-45989600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr11:45971200-45992400	Weak transcription	Small Intestine	intestine
25	chr11:45971400-45990800	Weak transcription	HUVEC	blood vessel
26	chr11:45971600-45986600	Weak transcription	Fetal Brain Male	brain
27	chr11:45971800-45991400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr11:45972000-45986600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:45972000-45986800	Weak transcription	Aorta	Aorta
30	chr11:45972000-45989000	Weak transcription	Brain Cingulate Gyrus	brain
31	chr11:45972200-45992400	Weak transcription	Psoas Muscle	Psoas
32	chr11:45972600-45986600	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr11:45972800-45986000	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:45972800-45988600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr11:45974000-45986600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr11:45974200-45986000	Weak transcription	Colon Smooth Muscle	Colon
37	chr11:45975000-45985400	Weak transcription	Duodenum Mucosa	Duodenum
38	chr11:45975000-45986800	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr11:45975000-45989000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr11:45975200-45985800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:45975200-45985800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:45975200-45986400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr11:45975200-45986400	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:45975200-45988600	Weak transcription	Brain Substantia Nigra	brain
45	chr11:45975200-45991600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr11:45975200-45999200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr11:45975400-45985800	Weak transcription	Osteobl	bone
48	chr11:45975400-45986600	Weak transcription	Placenta	Placenta
49	chr11:45977000-45992200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr11:45977200-45985000	Weak transcription	Hela-S3	cervix

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