Variant report

Variant	rs12224687
Chromosome Location	chr11:5748642-5748643
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10400251	0.87[EUR][1000 genomes]
rs10742781	0.99[ASN][1000 genomes]
rs10769202	0.97[ASN][1000 genomes]
rs11038865	0.99[ASN][1000 genomes]
rs11038881	0.96[ASN][1000 genomes]
rs11038884	0.95[ASN][1000 genomes]
rs11038885	0.94[ASN][1000 genomes]
rs11038886	0.95[ASN][1000 genomes]
rs11603678	0.92[ASN][1000 genomes]
rs12223005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12224409	1.00[ASN][1000 genomes]
rs12792180	0.87[EUR][1000 genomes]
rs12800896	0.83[EUR][1000 genomes]
rs12803433	0.87[EUR][1000 genomes]
rs12805134	0.86[EUR][1000 genomes]
rs1498551	0.95[ASN][1000 genomes]
rs1498560	0.97[ASN][1000 genomes]
rs1498561	0.99[ASN][1000 genomes]
rs1532516	0.95[ASN][1000 genomes]
rs1603796	0.88[EUR][1000 genomes]
rs2133265	0.98[ASN][1000 genomes]
rs2133267	0.98[ASN][1000 genomes]
rs34464178	0.86[EUR][1000 genomes]
rs34559010	0.87[EUR][1000 genomes]
rs34624600	0.84[EUR][1000 genomes]
rs34734399	0.86[EUR][1000 genomes]
rs34772298	0.86[EUR][1000 genomes]
rs34818142	0.82[EUR][1000 genomes]
rs35257755	0.84[EUR][1000 genomes]
rs35476279	0.82[EUR][1000 genomes]
rs35725436	0.86[EUR][1000 genomes]
rs36173363	0.90[EUR][1000 genomes]
rs4457786	0.87[EUR][1000 genomes]
rs4573706	0.87[EUR][1000 genomes]
rs57610338	0.93[ASN][1000 genomes]
rs57677974	1.00[ASN][1000 genomes]
rs59894273	0.84[ASN][1000 genomes]
rs6578681	0.95[ASN][1000 genomes]
rs7120306	0.93[ASN][1000 genomes]
rs7128460	1.00[ASN][1000 genomes]
rs71490147	0.82[EUR][1000 genomes]
rs71490148	0.82[EUR][1000 genomes]
rs7396310	0.96[ASN][1000 genomes]
rs7397032	0.99[ASN][1000 genomes]
rs7479906	0.98[ASN][1000 genomes]
rs7482494	0.97[ASN][1000 genomes]
rs7482656	0.95[ASN][1000 genomes]
rs7925088	0.97[ASN][1000 genomes]
rs7930210	1.00[ASN][1000 genomes]
rs7937241	0.87[EUR][1000 genomes]
rs7949329	0.99[ASN][1000 genomes]
rs7951137	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046068	chr11:5335943-6063742	Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv896939	chr11:5497799-5809548	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv553241	chr11:5506034-6203685	Genic enhancers Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv1041568	chr11:5585716-5765688	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv1053414	chr11:5612989-6030212	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	nsv530216	chr11:5614439-6468232	Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
7	nsv553273	chr11:5639873-5871831	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv1036389	chr11:5695451-6177680	Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
9	nsv540943	chr11:5695451-6177680	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
10	nsv553277	chr11:5722948-6010075	Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
11	esv1843296	chr11:5730377-5970717	Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
12	esv2758255	chr11:5730377-5970717	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
13	esv2759801	chr11:5730377-6007613	ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
14	nsv896950	chr11:5740634-5827540	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
15	nsv832058	chr11:5747594-5926814	Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:5731200-5749200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:5732400-5750000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:5747400-5762400	Weak transcription	Left Ventricle	heart
4	chr11:5748200-5748800	Enhancers	Placenta	Placenta
5	chr11:5748200-5749400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links