Variant report

Variant	rs12224777
Chromosome Location	chr11:36722371-36722372
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11033695	0.90[CHB][hapmap];0.84[JPT][hapmap]
rs11033698	0.85[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];0.88[YRI][hapmap];0.81[EUR][1000 genomes]
rs11033699	0.85[CEU][hapmap];0.83[CHB][hapmap];0.84[JPT][hapmap]
rs11033703	0.81[EUR][1000 genomes]
rs11033715	0.84[CEU][hapmap];0.91[CHB][hapmap];0.84[JPT][hapmap];0.94[YRI][hapmap];0.81[EUR][1000 genomes]
rs11033770	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs11033776	0.80[ASN][1000 genomes]
rs11033781	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs11033782	0.85[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12221669	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12225581	0.82[AFR][1000 genomes]
rs12225867	0.80[CEU][hapmap];0.92[CHB][hapmap];0.87[CHD][hapmap];0.84[JPT][hapmap];0.81[TSI][hapmap]
rs12276665	0.80[ASN][1000 genomes]
rs12276715	0.80[ASN][1000 genomes]
rs1356049	0.80[CEU][hapmap];0.92[CHB][hapmap]
rs1399602	0.80[CEU][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap]
rs1515060	0.92[CHB][hapmap];0.84[JPT][hapmap]
rs2133164	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2422294	0.80[CEU][hapmap];0.92[CHB][hapmap]
rs332439	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4151002	0.80[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap]
rs4756337	0.80[ASN][1000 genomes]
rs5030416	0.91[JPT][hapmap]
rs55912446	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56111224	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs61880060	0.81[EUR][1000 genomes]
rs61880061	0.81[EUR][1000 genomes]
rs61880071	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7105311	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7479143	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7944264	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv832123	chr11:36582872-36757443	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv467792	chr11:36624187-36898373	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv554005	chr11:36624187-36898373	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv467793	chr11:36632515-37171833	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv554006	chr11:36632515-37171833	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1047073	chr11:36711638-36812910	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1041508	chr11:36711638-36815367	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1043391	chr11:36711638-36817144	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv554007	chr11:36711834-36825618	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36718400-36729000	Weak transcription	Fetal Stomach	stomach
2	chr11:36720400-36725400	Enhancers	Fetal Thymus	thymus
3	chr11:36720600-36724200	Enhancers	Thymus	Thymus
4	chr11:36721000-36723000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:36721600-36722800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr11:36721800-36722800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:36721800-36722800	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr11:36721800-36724000	Weak transcription	Fetal Kidney	kidney
9	chr11:36721800-36724400	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr11:36721800-36725200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:36722000-36722800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:36722000-36723000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr11:36722000-36723000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr11:36722200-36723000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:36722200-36724000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:36722200-36725200	Enhancers	Dnd41	blood
17	chr11:36722200-36731000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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