Variant report

Variant	rs12225028
Chromosome Location	chr11:46166803-46166804
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10769191	0.86[ASN][1000 genomes]
rs10838569	0.94[ASN][1000 genomes]
rs12221754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv511476	chr11:46161054-46169659	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46164600-46170800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:46164800-46170800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:46165400-46170400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:46166400-46167000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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