Variant report

Variant	rs12225319
Chromosome Location	chr11:23848361-23848362
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10500969	0.82[ASN][1000 genomes]
rs10742002	0.83[ASN][1000 genomes]
rs10742003	0.86[ASN][1000 genomes]
rs10742004	0.86[ASN][1000 genomes]
rs10767122	0.84[ASN][1000 genomes]
rs10767123	0.85[ASN][1000 genomes]
rs10834196	0.81[ASN][1000 genomes]
rs10834197	0.82[ASN][1000 genomes]
rs10834198	0.82[ASN][1000 genomes]
rs10834199	0.82[ASN][1000 genomes]
rs10834203	0.85[ASN][1000 genomes]
rs12419586	0.85[ASN][1000 genomes]
rs1528552	0.86[ASN][1000 genomes]
rs1528553	0.86[ASN][1000 genomes]
rs1528554	0.85[ASN][1000 genomes]
rs1528555	0.85[ASN][1000 genomes]
rs1528556	0.86[ASN][1000 genomes]
rs1528557	0.86[ASN][1000 genomes]
rs3886450	0.86[ASN][1000 genomes]
rs4131590	0.81[ASN][1000 genomes]
rs4131591	0.81[ASN][1000 genomes]
rs4304772	0.84[ASN][1000 genomes]
rs4315068	0.87[ASN][1000 genomes]
rs4316509	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs4319517	0.86[ASN][1000 genomes]
rs4332526	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs4512817	0.83[ASN][1000 genomes]
rs4537758	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4539323	0.83[ASN][1000 genomes]
rs4569007	0.84[ASN][1000 genomes]
rs6483990	0.82[ASN][1000 genomes]
rs7113510	0.87[ASN][1000 genomes]
rs7123064	0.82[ASN][1000 genomes]
rs7948427	0.86[ASN][1000 genomes]
rs7951414	0.86[ASN][1000 genomes]
rs7951424	0.86[ASN][1000 genomes]
rs7951537	0.86[ASN][1000 genomes]
rs7951542	0.86[ASN][1000 genomes]
rs7951878	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv897063	chr11:23723766-23940407	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv897064	chr11:23767292-23859991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv897065	chr11:23767292-23882931	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv897066	chr11:23777459-23859991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv897067	chr11:23777459-23861558	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897068	chr11:23777459-23882931	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv467741	chr11:23781534-23944659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv553767	chr11:23781534-23944659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1054145	chr11:23796462-23860421	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1053104	chr11:23796462-23870291	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1054249	chr11:23796462-23883614	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv469943	chr11:23796710-23859991	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv527858	chr11:23796711-23859991	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv553769	chr11:23796711-23864290	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv897069	chr11:23801412-23864290	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
19	nsv553770	chr11:23801412-23865129	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
20	nsv832088	chr11:23811591-23945749	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv1042369	chr11:23817905-23848437	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
22	nsv553771	chr11:23825236-23875164	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
23	nsv1039983	chr11:23830385-23857666	Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23848000-23848800	Enhancers	Fetal Lung	lung

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