Variant report

Variant	rs12227213
Chromosome Location	chr12:119655497-119655498
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10849634	1.00[ASN][1000 genomes]
rs11064712	0.80[ASN][1000 genomes]
rs11064713	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11064717	0.82[ASN][1000 genomes]
rs11064718	0.82[ASN][1000 genomes]
rs12227230	0.82[ASN][1000 genomes]
rs3742083	0.82[ASN][1000 genomes]
rs73412061	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047036	chr12:119477583-119992640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv832528	chr12:119638211-119793401	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:119647000-119662400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:119654800-119655800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr12:119655000-119655600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:119655000-119655600	Enhancers	H9 Cell Line	embryonic stem cell
5	chr12:119655000-119658800	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr12:119655400-119658400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:119655400-119659800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links