Variant report

Variant	rs12227624
Chromosome Location	chr12:67518124-67518125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:67514344..67515893-chr12:67517427..67520361,2	MCF-7	breast:
2	chr12:67462821..67465133-chr12:67517214..67520010,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000256248	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10459266	0.83[ASN][1000 genomes]
rs10784605	0.96[ASN][1000 genomes]
rs10784606	1.00[ASN][1000 genomes]
rs10784607	1.00[ASN][1000 genomes]
rs10784608	1.00[ASN][1000 genomes]
rs10784609	1.00[ASN][1000 genomes]
rs10878553	0.83[ASN][1000 genomes]
rs10878559	1.00[ASN][1000 genomes]
rs10878560	1.00[ASN][1000 genomes]
rs10878561	1.00[ASN][1000 genomes]
rs10878566	1.00[ASN][1000 genomes]
rs11176552	0.83[ASN][1000 genomes]
rs11176555	0.83[ASN][1000 genomes]
rs11176556	0.81[ASN][1000 genomes]
rs11176557	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11176562	0.93[ASN][1000 genomes]
rs11176567	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11176577	0.89[ASN][1000 genomes]
rs11176580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176582	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11176586	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11176589	1.00[EUR][1000 genomes]
rs11176627	0.87[EUR][1000 genomes]
rs11829047	1.00[ASN][1000 genomes]
rs12227692	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12228046	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12228922	0.86[ASN][1000 genomes]
rs12228998	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12230670	1.00[ASN][1000 genomes]
rs12231102	0.96[ASN][1000 genomes]
rs12833688	1.00[ASN][1000 genomes]
rs1465026	1.00[ASN][1000 genomes]
rs1526835	0.93[ASN][1000 genomes]
rs1526839	1.00[ASN][1000 genomes]
rs1589971	0.81[ASN][1000 genomes]
rs2870926	0.83[ASN][1000 genomes]
rs2904534	0.96[ASN][1000 genomes]
rs4244070	0.96[ASN][1000 genomes]
rs4913529	0.96[ASN][1000 genomes]
rs6581735	0.93[ASN][1000 genomes]
rs6581740	0.98[ASN][1000 genomes]
rs7136952	0.83[ASN][1000 genomes]
rs7138249	0.83[ASN][1000 genomes]
rs7298268	0.93[ASN][1000 genomes]
rs7311137	0.98[ASN][1000 genomes]
rs7959866	0.83[ASN][1000 genomes]
rs7961562	0.91[ASN][1000 genomes]
rs7961790	0.98[ASN][1000 genomes]
rs7961954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7962241	0.98[ASN][1000 genomes]
rs7974866	1.00[ASN][1000 genomes]
rs7980101	0.98[ASN][1000 genomes]
rs941096	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv541524	chr12:67311057-67700349	Strong transcription Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv559212	chr12:67373549-67850925	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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