Variant report

Variant	rs12229896
Chromosome Location	chr12:87623962-87623963
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10777024	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10858564	0.84[ASN][1000 genomes]
rs10858567	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10858568	0.86[ASN][1000 genomes]
rs10858569	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11104229	0.82[AMR][1000 genomes]
rs11104230	0.82[AMR][1000 genomes]
rs11104232	0.82[AMR][1000 genomes]
rs11104239	0.82[AMR][1000 genomes]
rs11104256	0.82[AMR][1000 genomes]
rs11104295	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11104300	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11104304	1.00[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11104309	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11104313	0.81[AMR][1000 genomes]
rs11104319	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11104327	0.81[ASN][1000 genomes]
rs11104337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11104338	0.84[ASN][1000 genomes]
rs11104346	0.84[ASN][1000 genomes]
rs11104347	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11104348	0.85[ASN][1000 genomes]
rs11104355	0.86[ASN][1000 genomes]
rs11104356	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11104358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11104359	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11104416	0.84[EUR][1000 genomes]
rs11104428	0.88[AFR][1000 genomes]
rs11104429	0.88[AFR][1000 genomes]
rs11531142	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11609047	0.85[ASN][1000 genomes]
rs12230862	0.82[AMR][1000 genomes]
rs12231797	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12306179	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12582021	0.85[ASN][1000 genomes]
rs1326737	0.86[ASN][1000 genomes]
rs1326738	0.86[ASN][1000 genomes]
rs13377673	0.84[ASN][1000 genomes]
rs17014557	0.88[EUR][1000 genomes]
rs2038951	0.85[ASN][1000 genomes]
rs58944047	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66524260	0.84[ASN][1000 genomes]
rs67450104	0.84[ASN][1000 genomes]
rs67601138	0.84[ASN][1000 genomes]
rs67685417	0.84[ASN][1000 genomes]
rs67863729	0.85[ASN][1000 genomes]
rs67898543	0.84[ASN][1000 genomes]
rs7137204	0.84[ASN][1000 genomes]
rs73199715	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916862	chr12:86837694-87718558	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899397	chr12:86863041-87636831	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1054581	chr12:87510821-87669648	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:87623200-87624600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:87623400-87624200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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