Variant report

Variant	rs12231165
Chromosome Location	chr12:45900383-45900384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10785576	0.84[ASN][1000 genomes]
rs10880794	0.83[ASN][1000 genomes]
rs10880800	0.80[ASN][1000 genomes]
rs10880803	0.81[ASN][1000 genomes]
rs10880804	0.81[ASN][1000 genomes]
rs11183072	0.81[ASN][1000 genomes]
rs11183077	0.83[ASN][1000 genomes]
rs11183078	0.83[ASN][1000 genomes]
rs11183079	0.83[ASN][1000 genomes]
rs12298570	0.83[ASN][1000 genomes]
rs12303053	0.81[ASN][1000 genomes]
rs12316574	0.81[ASN][1000 genomes]
rs12317115	0.83[ASN][1000 genomes]
rs12320604	0.81[ASN][1000 genomes]
rs12321802	0.81[ASN][1000 genomes]
rs2408272	0.84[ASN][1000 genomes]
rs2408318	0.84[ASN][1000 genomes]
rs2408323	0.83[ASN][1000 genomes]
rs34265125	0.81[ASN][1000 genomes]
rs4570651	0.83[ASN][1000 genomes]
rs4768090	0.84[ASN][1000 genomes]
rs4768623	0.83[ASN][1000 genomes]
rs73285289	0.81[ASN][1000 genomes]
rs7968560	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832395	chr12:45841765-46039297	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv508672	chr12:45884730-45931091	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1812235	chr12:45892993-45909531	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1791767	chr12:45892993-45912862	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv691	chr12:45896295-45946455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv558754	chr12:45898888-45909531	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv558755	chr12:45899396-45909059	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45892200-45901600	Weak transcription	Pancreas	Pancrea
2	chr12:45896800-45901600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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